Protein : Qrob_P0618920.2 Q. robur
Protein Identifier  ? Qrob_P0618920.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02265 - cytochrome c oxidase subunit Vb [EC:1.9.3.1] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 125  
Kegg Orthology  K02265
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0004129 cytochrome-c oxidase activity Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
GO:0005740 mitochondrial envelope The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_047059 1 106 + 106 Gaps:2 63.86 166 57.55 3e-32 Rubredoxin-like superfamily protein
blastp_kegg lcl|rcu:RCOM_0897910 1 106 + 106 Gaps:6 64.33 171 59.09 2e-31 cytochrome C oxidase putative
blastp_kegg lcl|brp:103869894 1 106 + 106 Gaps:7 64.16 173 54.05 5e-28 cytochrome c oxidase subunit 5b-1 mitochondrial-like
blastp_kegg lcl|pop:POPTR_0003s05880g 1 106 + 106 Gaps:4 62.58 163 66.67 9e-28 POPTRDRAFT_830672 cytochrome c oxidase family protein
blastp_kegg lcl|pop:POPTR_0001s17370g 1 106 + 106 Gaps:3 63.69 168 64.49 2e-26 POPTRDRAFT_548614 cytochrome c oxidase-related family protein
blastp_kegg lcl|vvi:100251589 1 106 + 106 Gaps:15 65.34 176 56.52 2e-26 cytochrome c oxidase family protein
blastp_kegg lcl|ath:AT1G80230 1 106 + 106 Gaps:9 66.08 171 47.79 2e-24 cytochrome c oxidase subunit 5b-2
blastp_kegg lcl|csv:101229550 1 97 + 97 Gaps:10 70.95 148 55.24 8e-24 cytochrome c oxidase subunit 5b-2 mitochondrial-like
blastp_kegg lcl|csv:101211621 1 106 + 106 Gaps:10 65.52 174 50.88 8e-24 cytochrome c oxidase subunit 5b-2 mitochondrial-like
blastp_kegg lcl|gmx:100527520 1 106 + 106 Gaps:14 61.44 153 55.32 3e-23 uncharacterized LOC100527520
blastp_uniprot_sprot sp|Q9SSB8|CX5B2_ARATH 1 106 + 106 Gaps:9 66.08 171 47.79 6e-26 Cytochrome c oxidase subunit 5b-2 mitochondrial OS Arabidopsis thaliana GN COX5B-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LW15|CX5B1_ARATH 1 106 + 106 Gaps:8 64.77 176 50.88 3e-20 Cytochrome c oxidase subunit 5b-1 mitochondrial OS Arabidopsis thaliana GN COX5B-1 PE 2 SV 1
rpsblast_cdd gnl|CDD|177931 1 97 + 97 Gaps:8 59.20 174 64.08 2e-39 PLN02294 PLN02294 cytochrome c oxidase subunit Vb.
rpsblast_cdd gnl|CDD|28837 55 97 + 43 none 44.33 97 44.19 3e-07 cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO) the terminal oxidase in the respiratory chains of eukaryotes and most bacteria is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I II and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly..
rpsblast_kog gnl|CDD|38562 5 97 + 93 Gaps:4 63.40 153 30.93 4e-12 KOG3352 KOG3352 KOG3352 Cytochrome c oxidase subunit Vb/COX4 [Energy production and conversion].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 56 99 44 G3DSA:2.60.11.10 none none IPR002124
Phobius 1 11 11 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 38 38 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 39 124 86 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProDom 67 106 40 PD007270 none C CYTOCHROME OXIDASE MEMBRANE VB SUBUNIT POLYPEPTIDE MITOCHONDRION OXIDOREDUCTASE INNER IPR002124
Phobius 21 38 18 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 12 20 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 55 99 45 SSF57802 none none none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 15 14

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting