Protein : Qrob_P0613070.2 Q. robur
Protein Identifier  ? Qrob_P0613070.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) PTHR13260 - ANAPHASE PROMOTING COMPLEX SUBUNIT 4 (APC4) (CYCLOSOME SUBUNIT 4) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 222  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005680 anaphase-promoting complex A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. Substrate recognition by APC occurs through degradation signals, the most common of which is termed the Dbox degradation motif, originally discovered in cyclin B.
GO:0030071 regulation of mitotic metaphase/anaphase transition Any process that modulates the frequency, rate or extent of the onset of anaphase (chromosome movement) in the mitotic cell cycle.
GO:0031145 anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_029983 1 221 + 221 Gaps:74 37.60 774 59.11 7e-96 Transducin/WD40 repeat-like superfamily protein isoform 1
blastp_kegg lcl|vvi:100854764 2 221 + 220 Gaps:72 53.78 543 57.88 1e-95 anaphase-promoting complex subunit 4-like
blastp_kegg lcl|pmum:103324640 1 221 + 221 Gaps:73 37.89 776 58.50 2e-94 anaphase-promoting complex subunit 4
blastp_kegg lcl|pper:PRUPE_ppa001703mg 1 221 + 221 Gaps:73 37.89 776 58.50 2e-94 hypothetical protein
blastp_kegg lcl|vvi:100255109 2 221 + 220 Gaps:72 38.07 767 57.88 6e-94 anaphase-promoting complex subunit 4-like
blastp_kegg lcl|fve:101308844 1 221 + 221 Gaps:91 40.68 767 52.56 5e-89 LOW QUALITY PROTEIN: anaphase-promoting complex subunit 4-like
blastp_kegg lcl|gmx:100527617 2 221 + 220 Gaps:72 37.58 777 54.79 2e-88 uncharacterized LOC100527617
blastp_kegg lcl|cam:101507734 1 221 + 221 Gaps:75 37.47 774 55.52 2e-88 anaphase-promoting complex subunit 4-like
blastp_kegg lcl|cit:102627214 1 221 + 221 Gaps:79 37.48 763 56.64 2e-88 anaphase-promoting complex subunit 4-like
blastp_kegg lcl|pop:POPTR_0004s03490g 1 221 + 221 Gaps:79 37.98 753 58.39 1e-87 POPTRDRAFT_817758 hypothetical protein
blastp_uniprot_sprot sp|O65418|APC4_ARATH 1 221 + 221 Gaps:72 37.71 777 50.85 7e-79 Anaphase-promoting complex subunit 4 OS Arabidopsis thaliana GN APC4 PE 2 SV 2
rpsblast_cdd gnl|CDD|205132 25 196 + 172 Gaps:56 100.00 208 23.56 4e-19 pfam12896 Apc4 Anaphase-promoting complex cyclosome subunit 4. Apc4 is one of the larger of the subunits of the anaphase-promoting complex or cyclosome. This family represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. Results in C.elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. the APC/C is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism.
rpsblast_kog gnl|CDD|39840 1 200 + 200 Gaps:98 44.81 665 18.46 9e-24 KOG4640 KOG4640 KOG4640 Anaphase-promoting complex (APC) subunit 4 [Cell cycle control cell division chromosome partitioning Posttranslational modification protein turnover chaperones].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 82 128 47 PF12896 "UniPathway:UPA00143" Anaphase-promoting complex, cyclosome, subunit 4 IPR024790
Pfam 26 82 57 PF12896 "UniPathway:UPA00143" Anaphase-promoting complex, cyclosome, subunit 4 IPR024790
PANTHER 1 200 200 PTHR13260 "UniPathway:UPA00143";signature_desc=ANAPHASE PROMOTING COMPLEX SUBUNIT 4 (APC4) (CYCLOSOME SUBUNIT 4) none IPR024789

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting