Protein : Qrob_P0612780.2 Q. robur
Protein Identifier  ? Qrob_P0612780.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K08736 - DNA mismatch repair protein MSH3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 236  
Kegg Orthology  K08736
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006298 mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1496410 1 154 + 154 Gaps:5 13.55 1100 85.91 1e-78 DNA mismatch repair protein MSH3 putative
blastp_kegg lcl|mdm:103439741 1 154 + 154 none 13.49 1142 83.12 3e-78 DNA mismatch repair protein MSH3
blastp_kegg lcl|csv:101229633 1 154 + 154 none 15.94 966 78.57 2e-77 DNA mismatch repair protein MSH3-like
blastp_kegg lcl|pxb:103960554 1 154 + 154 none 13.49 1142 83.12 2e-77 DNA mismatch repair protein MSH3
blastp_kegg lcl|cmo:103484070 1 154 + 154 none 12.94 1190 79.22 3e-77 DNA mismatch repair protein MSH3
blastp_kegg lcl|cam:101502126 1 154 + 154 none 14.31 1076 80.52 3e-77 DNA mismatch repair protein MSH3-like
blastp_kegg lcl|csv:101214720 1 154 + 154 none 14.08 1094 78.57 7e-77 DNA mismatch repair protein MSH3-like
blastp_kegg lcl|pmum:103333228 1 154 + 154 none 13.73 1122 81.17 1e-76 DNA mismatch repair protein MSH3
blastp_kegg lcl|pper:PRUPE_ppa000560mg 1 154 + 154 none 14.05 1096 81.17 6e-76 hypothetical protein
blastp_kegg lcl|brp:103861568 1 154 + 154 Gaps:4 14.39 1098 77.22 1e-71 DNA mismatch repair protein MSH3
blastp_pdb 3thz_B 1 153 + 153 Gaps:16 17.10 918 50.32 1e-34 mol:protein length:918 DNA mismatch repair protein Msh3
blastp_pdb 3thy_B 1 153 + 153 Gaps:16 17.10 918 50.32 1e-34 mol:protein length:918 DNA mismatch repair protein Msh3
blastp_pdb 3thx_B 1 153 + 153 Gaps:16 17.10 918 50.32 1e-34 mol:protein length:918 DNA mismatch repair protein Msh3
blastp_pdb 3thw_B 1 153 + 153 Gaps:16 17.10 918 50.32 1e-34 mol:protein length:918 DNA mismatch repair protein Msh3
blastp_uniprot_sprot sp|O65607|MSH3_ARATH 1 157 + 157 Gaps:3 14.80 1081 71.88 5e-68 DNA mismatch repair protein MSH3 OS Arabidopsis thaliana GN MSH3 PE 1 SV 2
blastp_uniprot_sprot sp|A2R1F6|MSH3_ASPNC 2 154 + 153 Gaps:11 13.58 1119 50.00 8e-36 DNA mismatch repair protein msh3 OS Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN msh3 PE 3 SV 2
blastp_uniprot_sprot sp|A6R7S1|MSH3_AJECN 2 154 + 153 Gaps:10 12.95 1166 49.01 8e-35 DNA mismatch repair protein MSH3 OS Ajellomyces capsulatus (strain NAm1 / WU24) GN MSH3 PE 3 SV 2
blastp_uniprot_sprot sp|Q5B6T1|MSH3_EMENI 2 154 + 153 Gaps:9 13.57 1105 49.33 9e-35 DNA mismatch repair protein msh3 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN msh3 PE 3 SV 2
blastp_uniprot_sprot sp|Q4WGB7|MSH3_ASPFU 2 203 + 202 Gaps:21 17.36 1123 43.08 3e-34 DNA mismatch repair protein msh3 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN msh3 PE 3 SV 1
blastp_uniprot_sprot sp|B0YCF6|MSH3_ASPFC 2 203 + 202 Gaps:21 17.36 1123 43.08 3e-34 DNA mismatch repair protein msh3 OS Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN msh3 PE 3 SV 1
blastp_uniprot_sprot sp|A1DCB2|MSH3_NEOFI 2 203 + 202 Gaps:21 17.46 1117 43.08 3e-34 DNA mismatch repair protein msh3 OS Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN msh3 PE 3 SV 1
blastp_uniprot_sprot sp|P20585|MSH3_HUMAN 1 153 + 153 Gaps:16 13.81 1137 50.32 8e-34 DNA mismatch repair protein Msh3 OS Homo sapiens GN MSH3 PE 1 SV 4
blastp_uniprot_sprot sp|A1CDD4|MSH3_ASPCL 2 203 + 202 Gaps:25 17.26 1130 43.08 2e-33 DNA mismatch repair protein msh3 OS Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN msh3 PE 3 SV 1
blastp_uniprot_sprot sp|Q2UT70|MSH3_ASPOR 2 154 + 153 Gaps:12 13.77 1111 49.02 3e-33 DNA mismatch repair protein msh3 OS Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN msh3 PE 3 SV 1
rpsblast_cdd gnl|CDD|30598 3 194 + 192 Gaps:37 18.39 843 30.97 5e-11 COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|144998 1 59 + 59 Gaps:6 46.90 113 37.74 5e-09 pfam01624 MutS_I MutS domain I. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488 pfam05188 pfam05192 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair other members of the family included the eukaryotic MSH 1 2 3 4 5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with globular domain I which is involved in DNA binding in Thermus aquaticus MutS as characterized in.
rpsblast_kog gnl|CDD|35439 1 222 + 222 Gaps:21 18.97 1070 42.36 4e-48 KOG0218 KOG0218 KOG0218 Mismatch repair MSH3 [Replication recombination and repair].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 76 156 81 G3DSA:3.30.420.110 none none IPR007860
Gene3D 1 59 59 G3DSA:3.40.1170.10 none none IPR016151
SUPERFAMILY 2 58 57 SSF55271 none none IPR016151
PANTHER 1 84 84 PTHR11361:SF34 none none none
PANTHER 103 157 55 PTHR11361:SF34 none none none
PANTHER 103 157 55 PTHR11361 none none none
Pfam 2 60 59 PF01624 none MutS domain I IPR007695
Pfam 77 165 89 PF05188 none MutS domain II IPR007860
SUPERFAMILY 74 154 81 SSF53150 none none IPR007860
PANTHER 1 84 84 PTHR11361 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4

0 Targeting