Protein : Qrob_P0610210.2 Q. robur
Protein Identifier  ? Qrob_P0610210.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR12001:SF41 - HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC (PTHR12001:SF41) Code Enzyme  EC:2.5.1.29
Gene Prediction Quality  validated Protein length 

Sequence

Length: 347  
Kegg Orthology  K13789
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0008299 isoprenoid biosynthetic process The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0009s14150g 33 346 + 314 Gaps:3 90.72 345 85.62 0.0 POPTRDRAFT_649179 geranylgeranyl pyrophosphate synthase family protein
blastp_kegg lcl|pop:POPTR_0004s18610g 1 341 + 341 Gaps:13 98.56 347 80.70 0.0 POPTRDRAFT_648837 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1373490 11 346 + 336 Gaps:5 96.52 345 79.88 0.0 geranyl geranyl pyrophosphate synthase putative (EC:1.3.1.74)
blastp_kegg lcl|tcc:TCM_006541 1 346 + 346 Gaps:12 81.93 415 75.29 0.0 Geranylgeranyl reductase
blastp_kegg lcl|pper:PRUPE_ppa008305mg 6 346 + 341 Gaps:15 98.52 337 76.20 0.0 hypothetical protein
blastp_kegg lcl|csv:101227444 14 346 + 333 Gaps:8 98.81 335 77.64 0.0 heterodimeric geranylgeranyl pyrophosphate synthase small subunit chloroplastic-like
blastp_kegg lcl|csv:101213533 14 346 + 333 Gaps:8 98.81 335 77.64 0.0 heterodimeric geranylgeranyl pyrophosphate synthase small subunit chloroplastic-like
blastp_kegg lcl|cmo:103490255 1 346 + 346 Gaps:17 100.00 335 77.31 0.0 heterodimeric geranylgeranyl pyrophosphate synthase small subunit chloroplastic
blastp_kegg lcl|fve:101296919 1 342 + 342 Gaps:13 100.00 329 78.72 3e-180 heterodimeric geranylgeranyl pyrophosphate synthase small subunit chloroplastic-like
blastp_kegg lcl|pmum:103334872 6 346 + 341 Gaps:15 98.52 337 75.60 5e-180 heterodimeric geranylgeranyl pyrophosphate synthase small subunit chloroplastic
blastp_pdb 2j1p_B 56 338 + 283 Gaps:22 94.54 293 46.21 8e-81 mol:protein length:293 GERANYLGERANYL PYROPHOSPHATE SYNTHETASE
blastp_pdb 2j1p_A 56 338 + 283 Gaps:22 94.54 293 46.21 8e-81 mol:protein length:293 GERANYLGERANYL PYROPHOSPHATE SYNTHETASE
blastp_pdb 3oac_D 52 338 + 287 Gaps:15 98.98 295 39.38 7e-68 mol:protein length:295 Geranyl diphosphate synthase large subunit
blastp_pdb 3oac_A 52 338 + 287 Gaps:15 98.98 295 39.38 7e-68 mol:protein length:295 Geranyl diphosphate synthase large subunit
blastp_pdb 3oab_D 52 338 + 287 Gaps:15 98.98 295 39.38 7e-68 mol:protein length:295 Geranyl diphosphate synthase large subunit
blastp_pdb 3oab_A 52 338 + 287 Gaps:15 98.98 295 39.38 7e-68 mol:protein length:295 Geranyl diphosphate synthase large subunit
blastp_pdb 3krp_D 52 338 + 287 Gaps:15 98.98 295 39.38 7e-68 mol:protein length:295 Geranyl diphosphate synthase large subunit
blastp_pdb 3krp_A 52 338 + 287 Gaps:15 98.98 295 39.38 7e-68 mol:protein length:295 Geranyl diphosphate synthase large subunit
blastp_pdb 3kro_D 52 338 + 287 Gaps:15 98.98 295 39.38 7e-68 mol:protein length:295 Geranyl diphosphate synthase large subunit
blastp_pdb 3kro_A 52 338 + 287 Gaps:15 98.98 295 39.38 7e-68 mol:protein length:295 Geranyl diphosphate synthase large subunit
blastp_uniprot_sprot sp|Q39108|GGR_ARATH 49 340 + 292 Gaps:19 86.20 326 76.16 8e-139 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit chloroplastic OS Arabidopsis thaliana GN GGR PE 1 SV 2
blastp_uniprot_sprot sp|P34802|GGPP1_ARATH 50 338 + 289 Gaps:15 80.32 371 44.97 7e-84 Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1 chloroplastic OS Arabidopsis thaliana GN GGPPS1 PE 1 SV 2
blastp_uniprot_sprot sp|Q43133|GGPPS_SINAL 9 338 + 330 Gaps:18 91.80 366 42.26 1e-81 Geranylgeranyl pyrophosphate synthase chloroplastic/chromoplastic OS Sinapis alba GN GGPS1 PE 1 SV 1
blastp_uniprot_sprot sp|P80042|GGPPS_CAPAN 15 338 + 324 Gaps:21 90.79 369 41.49 7e-79 Geranylgeranyl pyrophosphate synthase chloroplastic OS Capsicum annuum GN GGPS1 PE 3 SV 1
blastp_uniprot_sprot sp|Q94ID7|GGPPS_HEVBR 52 338 + 287 Gaps:15 78.92 370 43.84 9e-79 Geranylgeranyl pyrophosphate synthase chloroplastic OS Hevea brasiliensis GN GGPS PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZU77|GGPP7_ARATH 48 338 + 291 Gaps:18 85.59 347 41.41 8e-75 Geranylgeranyl pyrophosphate synthase 7 chloroplastic OS Arabidopsis thaliana GN At2g18620 PE 2 SV 1
blastp_uniprot_sprot sp|Q42698|GGPPS_CATRO 53 338 + 286 Gaps:15 81.51 357 41.92 3e-74 Geranylgeranyl pyrophosphate synthase chloroplastic OS Catharanthus roseus GN GGPS1 PE 3 SV 1
blastp_uniprot_sprot sp|O04046|GGPP2_ARATH 52 339 + 288 Gaps:19 77.93 376 41.98 8e-72 Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 OS Arabidopsis thaliana GN GGPPS2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SLG2|GGPP4_ARATH 13 339 + 327 Gaps:21 89.25 372 39.46 4e-71 Geranylgeranyl pyrophosphate synthase 4 OS Arabidopsis thaliana GN GGPP4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LJY2|GGPPA_ARATH 45 338 + 294 Gaps:20 87.79 344 43.38 6e-70 Geranylgeranyl pyrophosphate synthase 10 mitochondrial OS Arabidopsis thaliana GN At3g20160 PE 2 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 34 279 246 PTHR12001 none none IPR017446
Pfam 82 314 233 PF00348 none Polyprenyl synthetase IPR000092
SUPERFAMILY 55 318 264 SSF48576 none none IPR008949
PANTHER 34 279 246 PTHR12001:SF41 none none none
Coils 267 288 22 Coil none none none
Coils 301 322 22 Coil none none none
Gene3D 51 335 285 G3DSA:1.10.600.10 none none IPR008949
ProSitePatterns 131 147 17 PS00723 none Polyprenyl synthases signature 1. IPR000092

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting