Protein : Qrob_P0609540.2 Q. robur
Protein Identifier  ? Qrob_P0609540.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR24073:SF432 - RAS-RELATED PROTEIN RABA1C-RELATED (PTHR24073:SF432) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 219  
Kegg Orthology  K07904
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0 Synonyms

9 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0007264 small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO:0006913 nucleocytoplasmic transport The directed movement of molecules between the nucleus and the cytoplasm.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_005G093700g 1 218 + 218 none 100.00 218 90.37 5e-144 hypothetical protein
blastp_kegg lcl|gmx:100499822 1 218 + 218 none 100.00 218 88.99 2e-141 uncharacterized LOC100499822
blastp_kegg lcl|gmx:547655 1 218 + 218 none 100.00 218 88.99 4e-141 small GTP-binding protein
blastp_kegg lcl|pper:PRUPE_ppa011234mg 1 218 + 218 none 100.00 218 88.07 5e-141 hypothetical protein
blastp_kegg lcl|tcc:TCM_008954 1 218 + 218 none 100.00 218 88.99 7e-141 Ras-related small GTP-binding family protein
blastp_kegg lcl|mdm:103444061 1 218 + 218 none 100.00 218 87.61 7e-141 ras-related protein Rab11D
blastp_kegg lcl|cam:101504539 1 218 + 218 none 100.00 218 88.53 2e-140 ras-related protein Rab11D-like
blastp_kegg lcl|pxb:103967412 1 218 + 218 none 100.00 218 87.61 3e-140 ras-related protein Rab11D
blastp_kegg lcl|pmum:103328333 1 218 + 218 none 100.00 218 87.61 4e-140 ras-related protein Rab11D
blastp_kegg lcl|fve:101313431 1 218 + 218 none 100.00 218 87.16 4e-140 ras-related protein Rab11D-like
blastp_pdb 2f9m_A 10 183 + 174 none 87.44 199 77.59 5e-100 mol:protein length:199 RAB11B member RAS oncogene family
blastp_pdb 2f9l_A 10 183 + 174 none 87.44 199 77.59 5e-100 mol:protein length:199 RAB11B member RAS oncogene family
blastp_pdb 1yzk_A 6 177 + 172 none 93.48 184 78.49 3e-99 mol:protein length:184 Ras-related protein Rab-11A
blastp_pdb 2hv8_C 8 177 + 170 none 98.84 172 79.41 6e-99 mol:protein length:172 Ras-related protein Rab-11A
blastp_pdb 2hv8_B 8 177 + 170 none 98.84 172 79.41 6e-99 mol:protein length:172 Ras-related protein Rab-11A
blastp_pdb 2hv8_A 8 177 + 170 none 98.84 172 79.41 6e-99 mol:protein length:172 Ras-related protein Rab-11A
blastp_pdb 1oiv_B 7 175 + 169 none 88.48 191 79.29 2e-98 mol:protein length:191 RAS-RELATED PROTEIN RAB-11A
blastp_pdb 1oiv_A 7 175 + 169 none 88.48 191 79.29 2e-98 mol:protein length:191 RAS-RELATED PROTEIN RAB-11A
blastp_pdb 2gzh_A 7 175 + 169 none 97.69 173 78.70 1e-97 mol:protein length:173 Ras-related protein Rab-11A
blastp_pdb 2gzd_B 7 175 + 169 none 97.69 173 78.70 1e-97 mol:protein length:173 Ras-related protein Rab-11A
blastp_uniprot_sprot sp|Q40194|RB11D_LOTJA 1 218 + 218 none 100.00 218 88.99 1e-143 Ras-related protein Rab11D OS Lotus japonicus GN RAB11D PE 2 SV 1
blastp_uniprot_sprot sp|Q01111|YPT3_NICPL 1 218 + 218 none 100.00 218 84.86 6e-136 Ras-related protein YPT3 OS Nicotiana plumbaginifolia GN YPT3 PE 2 SV 1
blastp_uniprot_sprot sp|Q40195|RB11E_LOTJA 1 218 + 218 none 100.00 218 85.78 1e-135 Ras-related protein Rab11E OS Lotus japonicus GN RAB11E PE 2 SV 1
blastp_uniprot_sprot sp|P28185|RAA1A_ARATH 1 218 + 218 Gaps:2 100.00 216 82.87 3e-132 Ras-related protein RABA1a OS Arabidopsis thaliana GN RABA1A PE 1 SV 1
blastp_uniprot_sprot sp|P40393|RIC2_ORYSJ 2 217 + 216 Gaps:2 98.62 217 82.24 2e-130 Ras-related protein RIC2 OS Oryza sativa subsp. japonica GN RIC2 PE 2 SV 2
blastp_uniprot_sprot sp|Q39222|RAA1B_ARATH 1 218 + 218 Gaps:2 100.00 216 79.63 2e-125 Ras-related protein RABA1b OS Arabidopsis thaliana GN RABA1B PE 2 SV 1
blastp_uniprot_sprot sp|Q9FK68|RAA1C_ARATH 1 218 + 218 Gaps:2 100.00 216 78.24 7e-123 Ras-related protein RABA1c OS Arabidopsis thaliana GN RABA1C PE 1 SV 1
blastp_uniprot_sprot sp|Q9SN35|RAA1D_ARATH 1 218 + 218 Gaps:4 100.00 214 78.97 1e-122 Ras-related protein RABA1d OS Arabidopsis thaliana GN RABA1D PE 2 SV 1
blastp_uniprot_sprot sp|Q9FJH0|RAA1F_ARATH 1 218 + 218 Gaps:5 100.00 217 76.50 1e-121 Ras-related protein RABA1f OS Arabidopsis thaliana GN RABA1F PE 2 SV 1
blastp_uniprot_sprot sp|Q9LK99|RAA1G_ARATH 1 218 + 218 Gaps:5 100.00 217 75.58 1e-119 Ras-related protein RABA1g OS Arabidopsis thaliana GN RABA1G PE 2 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 12 170 159 TIGR00231 none small_GTP: small GTP-binding protein domain IPR005225
SUPERFAMILY 9 179 171 SSF52540 none none IPR027417
Gene3D 7 208 202 G3DSA:3.40.50.300 none none IPR027417
SMART 16 173 158 SM00174 "Reactome:REACT_11044" Rho (Ras homology) subfamily of Ras-like small GTPases IPR003578
SMART 19 210 192 SM00176 none Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases IPR002041
PRINTS 14 35 22 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 55 77 23 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 152 174 23 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 37 53 17 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 117 130 14 PR00449 none Transforming protein P21 ras signature IPR001806
PANTHER 6 216 211 PTHR24073:SF432 none none none
SMART 11 177 167 SM00173 none Ras subfamily of RAS small GTPases IPR020849
ProSiteProfiles 9 216 208 PS51419 none small GTPase Rab1 family profile. none
PANTHER 6 216 211 PTHR24073 none none none
SMART 14 177 164 SM00175 none Rab subfamily of small GTPases IPR003579
Pfam 15 175 161 PF00071 none Ras family IPR001806

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting