Protein : Qrob_P0605740.2 Q. robur
Protein Identifier  ? Qrob_P0605740.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02864 - large subunit ribosomal protein L10 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 230  
Kegg Orthology  K02864
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa010824mg 13 224 + 212 Gaps:6 92.31 234 76.39 6e-115 hypothetical protein
blastp_kegg lcl|mdm:103409134 1 224 + 224 Gaps:17 99.58 240 71.97 2e-114 50S ribosomal protein L10 chloroplastic-like
blastp_kegg lcl|pmum:103334470 13 224 + 212 Gaps:6 92.31 234 75.46 3e-113 50S ribosomal protein L10 chloroplastic
blastp_kegg lcl|rcu:RCOM_0811410 1 221 + 221 Gaps:4 96.98 232 72.44 1e-111 50S ribosomal protein L10 putative
blastp_kegg lcl|pxb:103958881 1 217 + 217 Gaps:14 96.19 236 73.13 7e-111 50S ribosomal protein L10 chloroplastic
blastp_kegg lcl|pop:POPTR_0008s04560g 1 223 + 223 Gaps:13 99.56 227 74.34 3e-110 POPTRDRAFT_420878 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10032705mg 29 222 + 194 none 88.18 220 78.35 5e-110 hypothetical protein
blastp_kegg lcl|cit:102628862 29 222 + 194 none 88.18 220 78.35 5e-110 50S ribosomal protein L10 chloroplastic-like
blastp_kegg lcl|mdm:103445626 1 217 + 217 Gaps:14 96.19 236 73.13 1e-109 50S ribosomal protein L10 chloroplastic
blastp_kegg lcl|pop:POPTR_0010s22290g 1 223 + 223 Gaps:13 99.56 227 73.89 2e-109 POPTRDRAFT_1092314 hypothetical protein
blastp_pdb 1zax_A 46 212 + 167 Gaps:4 95.00 180 28.65 9e-17 mol:protein length:180 50S ribosomal protein L10
blastp_pdb 1zaw_A 46 212 + 167 Gaps:4 95.00 180 28.65 9e-17 mol:protein length:180 50S ribosomal protein L10
blastp_pdb 1zav_A 46 212 + 167 Gaps:4 95.00 180 28.65 9e-17 mol:protein length:180 50S ribosomal protein L10
blastp_pdb 3ms1_I 49 216 + 168 Gaps:8 97.11 173 30.95 1e-12 mol:protein length:173 50S ribosomal protein L10
blastp_pdb 3mrz_I 49 216 + 168 Gaps:8 97.11 173 30.95 1e-12 mol:protein length:173 50S ribosomal protein L10
blastp_pdb 3kiy_J 49 216 + 168 Gaps:8 97.11 173 30.95 1e-12 mol:protein length:173 50S ribosomal protein L10
blastp_pdb 3kiw_J 49 216 + 168 Gaps:8 97.11 173 30.95 1e-12 mol:protein length:173 50S ribosomal protein L10
blastp_pdb 3kit_J 49 216 + 168 Gaps:8 97.11 173 30.95 1e-12 mol:protein length:173 50S ribosomal protein L10
blastp_pdb 3kir_J 49 216 + 168 Gaps:8 97.11 173 30.95 1e-12 mol:protein length:173 50S ribosomal protein L10
blastp_pdb 3i8i_Y 49 216 + 168 Gaps:8 97.11 173 30.95 1e-12 mol:protein length:173 50S ribosomal protein L10
blastp_uniprot_sprot sp|O80362|RK10_TOBAC 1 222 + 222 Gaps:11 99.12 227 73.78 2e-108 50S ribosomal protein L10 chloroplastic OS Nicotiana tabacum GN RPL10 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FY50|RK10_ARATH 23 223 + 201 none 91.36 220 70.15 2e-103 50S ribosomal protein L10 chloroplastic OS Arabidopsis thaliana GN RPL10 PE 2 SV 1
blastp_uniprot_sprot sp|A9BDG5|RL10_PROM4 51 203 + 153 Gaps:6 87.43 175 36.60 3e-24 50S ribosomal protein L10 OS Prochlorococcus marinus (strain MIT 9211) GN rplJ PE 3 SV 1
blastp_uniprot_sprot sp|Q119S8|RL10_TRIEI 47 206 + 160 Gaps:5 83.68 190 34.59 3e-24 50S ribosomal protein L10 OS Trichodesmium erythraeum (strain IMS101) GN rplJ PE 3 SV 1
blastp_uniprot_sprot sp|A5GWK0|RL10_SYNR3 51 203 + 153 Gaps:5 87.36 174 33.55 4e-24 50S ribosomal protein L10 OS Synechococcus sp. (strain RCC307) GN rplJ PE 3 SV 1
blastp_uniprot_sprot sp|A2BNZ7|RL10_PROMS 51 218 + 168 Gaps:5 95.43 175 32.34 2e-23 50S ribosomal protein L10 OS Prochlorococcus marinus (strain AS9601) GN rplJ PE 3 SV 1
blastp_uniprot_sprot sp|Q7V383|RL10_PROMP 51 200 + 150 Gaps:5 85.14 175 34.23 2e-23 50S ribosomal protein L10 OS Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN rplJ PE 3 SV 1
blastp_uniprot_sprot sp|A2BUH9|RL10_PROM5 51 218 + 168 Gaps:5 95.43 175 32.93 5e-23 50S ribosomal protein L10 OS Prochlorococcus marinus (strain MIT 9515) GN rplJ PE 3 SV 1
blastp_uniprot_sprot sp|A3PAS0|RL10_PROM0 51 218 + 168 Gaps:5 95.43 175 31.74 6e-23 50S ribosomal protein L10 OS Prochlorococcus marinus (strain MIT 9301) GN rplJ PE 3 SV 1
blastp_uniprot_sprot sp|A8G2K9|RL10_PROM2 51 218 + 168 Gaps:5 95.43 175 31.74 6e-23 50S ribosomal protein L10 OS Prochlorococcus marinus (strain MIT 9215) GN rplJ PE 3 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 48 144 97 PF00466 none Ribosomal protein L10 IPR001790
PANTHER 26 220 195 PTHR11560 none none none
SUPERFAMILY 48 216 169 SSF160369 none none none
PANTHER 26 220 195 PTHR11560:SF8 none none none
Hamap 46 206 161 MF_00362 none 50S ribosomal protein L10 [rplJ]. IPR022973

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9

0 Targeting