3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
| GO:0006338 | chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. |
| GO:0031011 | Ino80 complex | A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity. |
11 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|vvi:100246939 | 2 | 186 | + | 185 | Gaps:11 | 33.45 | 586 | 76.53 | 9e-95 | uncharacterized LOC100246939 |
| blastp_kegg | lcl|mdm:103449200 | 1 | 186 | + | 186 | Gaps:9 | 33.28 | 586 | 72.31 | 8e-93 | cylicin-2-like |
| blastp_kegg | lcl|pper:PRUPE_ppa003322mg | 1 | 182 | + | 182 | Gaps:11 | 32.99 | 585 | 75.13 | 5e-92 | hypothetical protein |
| blastp_kegg | lcl|pxb:103938343 | 1 | 186 | + | 186 | Gaps:9 | 34.03 | 573 | 71.79 | 1e-91 | uncharacterized LOC103938343 |
| blastp_kegg | lcl|pmum:103334003 | 1 | 182 | + | 182 | Gaps:11 | 32.94 | 586 | 74.09 | 5e-91 | serine/arginine-rich splicing factor 4 |
| blastp_kegg | lcl|pxb:103967189 | 1 | 186 | + | 186 | Gaps:9 | 33.28 | 586 | 70.77 | 5e-89 | uncharacterized LOC103967189 |
| blastp_kegg | lcl|tcc:TCM_004823 | 1 | 186 | + | 186 | Gaps:11 | 34.20 | 576 | 77.16 | 6e-89 | HIT zinc finger PAPA-1-like conserved region isoform 1 |
| blastp_kegg | lcl|mdm:103432618 | 1 | 186 | + | 186 | Gaps:9 | 33.28 | 586 | 69.23 | 1e-86 | uncharacterized protein DDB_G0284459-like |
| blastp_kegg | lcl|cmo:103492752 | 1 | 186 | + | 186 | Gaps:12 | 33.91 | 578 | 71.43 | 1e-83 | INO80 complex subunit B |
| blastp_kegg | lcl|csv:101220648 | 1 | 186 | + | 186 | Gaps:12 | 33.97 | 577 | 71.43 | 2e-83 | uncharacterized LOC101220648 |
| rpsblast_cdd | gnl|CDD|203091 | 51 | 139 | + | 89 | none | 100.00 | 89 | 47.19 | 1e-19 | pfam04795 PAPA-1 PAPA-1-like conserved region. Family of proteins with a conserved region found in PAPA-1 a PAP-1 binding protein. |
5 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Pfam | 51 | 139 | 89 | PF04795 | none | PAPA-1-like conserved region | IPR006880 |
| Coils | 50 | 78 | 29 | Coil | none | none | none |
| PANTHER | 6 | 186 | 181 | PTHR21561:SF12 | none | none | IPR029523 |
| PANTHER | 6 | 186 | 181 | PTHR21561 | none | none | none |
| Pfam | 143 | 174 | 32 | PF04438 | none | HIT zinc finger | IPR007529 |
3 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2015_nEpiBC_3P | Qrob_Chr12 | 12 | s_1B73S5_217 | v_7050_211 | 28,31 | 26,37 | 28,45 | lod | 4.5 | 11.6 |
| Bourran2_2015_nP_3P | Qrob_Chr12 | 12 | v_10140_295 | v_838_303 | 16 | 14,69 | 18,01 | lod | 5.1 | 13.7 |
| Bourran2_2015_nSecLBD_3P | Qrob_Chr12 | 12 | s_A4YYC_633 | s_2F1IZB_703 | 18,64 | 18,01 | 21,53 | lod | 6.5 | 17.2 |
