Protein : Qrob_P0601360.2 Q. robur
Protein Identifier  ? Qrob_P0601360.2 Organism . Name  Quercus robur
Score  20.2 Score Type  egn
Protein Description  (M=2) PTHR11679:SF1 - VACUOLAR PROTEIN SORTING (VPS33) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 197  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0006904 vesicle docking involved in exocytosis The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103332334 2 176 + 175 Gaps:15 31.99 594 81.05 2e-98 vacuolar protein-sorting-associated protein 33 homolog
blastp_kegg lcl|pper:PRUPE_ppa003188mg 2 176 + 175 Gaps:15 31.99 594 81.05 2e-98 hypothetical protein
blastp_kegg lcl|cam:101504257 2 176 + 175 Gaps:15 31.88 596 80.53 5e-97 vacuolar protein sorting-associated protein 33 homolog
blastp_kegg lcl|fve:101312575 2 176 + 175 Gaps:15 31.77 598 78.95 2e-94 vacuolar protein sorting-associated protein 33 homolog
blastp_kegg lcl|gmx:100808578 2 176 + 175 Gaps:15 31.88 596 82.63 2e-92 vacuolar protein sorting-associated protein 33 homolog
blastp_kegg lcl|rcu:RCOM_1538620 2 176 + 175 Gaps:16 31.99 597 77.49 2e-92 vacuolar protein sorting putative
blastp_kegg lcl|pop:POPTR_0010s23340g 2 176 + 175 Gaps:15 31.25 608 78.42 4e-92 POPTRDRAFT_1092514 hypothetical protein
blastp_kegg lcl|mdm:103417693 2 176 + 175 Gaps:16 37.09 515 76.96 9e-92 vacuolar protein-sorting-associated protein 33 homolog
blastp_kegg lcl|csv:101230408 2 176 + 175 Gaps:15 31.88 596 76.84 1e-91 vacuolar protein sorting-associated protein 33 homolog
blastp_kegg lcl|cic:CICLE_v100310721m 8 176 + 169 Gaps:16 41.48 446 78.38 1e-91 hypothetical protein
blastp_uniprot_sprot sp|Q94KJ7|VPS33_ARATH 2 190 + 189 Gaps:21 33.45 592 69.70 8e-83 Vacuolar protein sorting-associated protein 33 homolog OS Arabidopsis thaliana GN VPS33 PE 2 SV 1
blastp_uniprot_sprot sp|Q96AX1|VP33A_HUMAN 9 176 + 168 Gaps:27 32.38 596 27.98 1e-14 Vacuolar protein sorting-associated protein 33A OS Homo sapiens GN VPS33A PE 1 SV 1
blastp_uniprot_sprot sp|Q63615|VP33A_RAT 9 176 + 168 Gaps:32 32.50 597 29.38 3e-14 Vacuolar protein sorting-associated protein 33A OS Rattus norvegicus GN Vps33a PE 1 SV 1
blastp_uniprot_sprot sp|Q9D2N9|VP33A_MOUSE 9 176 + 168 Gaps:33 32.61 598 29.23 3e-14 Vacuolar protein sorting-associated protein 33A OS Mus musculus GN Vps33a PE 1 SV 2
blastp_uniprot_sprot sp|Q63616|VP33B_RAT 9 176 + 168 Gaps:24 29.50 617 28.57 1e-12 Vacuolar protein sorting-associated protein 33B OS Rattus norvegicus GN Vps33b PE 2 SV 1
blastp_uniprot_sprot sp|P59016|VP33B_MOUSE 9 176 + 168 Gaps:24 29.50 617 28.57 1e-12 Vacuolar protein sorting-associated protein 33B OS Mus musculus GN Vps33b PE 1 SV 1
blastp_uniprot_sprot sp|Q58EN8|VP33B_DANRE 39 176 + 138 Gaps:10 22.37 617 35.51 2e-12 Vacuolar protein sorting-associated protein 33B OS Danio rerio GN vps33b PE 2 SV 1
blastp_uniprot_sprot sp|Q2HJ18|VP33B_BOVIN 9 176 + 168 Gaps:24 29.50 617 28.57 2e-12 Vacuolar protein sorting-associated protein 33B OS Bos taurus GN VPS33B PE 2 SV 1
blastp_uniprot_sprot sp|Q9H267|VP33B_HUMAN 9 176 + 168 Gaps:24 29.50 617 28.02 9e-12 Vacuolar protein sorting-associated protein 33B OS Homo sapiens GN VPS33B PE 1 SV 2
blastp_uniprot_sprot sp|Q9P7V6|VPS33_SCHPO 9 165 + 157 Gaps:28 30.91 592 27.32 4e-09 Vacuolar protein sorting-associated protein 33 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN vps33 PE 3 SV 1
rpsblast_cdd gnl|CDD|201542 8 178 + 171 Gaps:34 34.84 554 25.91 3e-21 pfam00995 Sec1 Sec1 family.
rpsblast_cdd gnl|CDD|34759 40 178 + 139 Gaps:8 24.23 582 26.24 5e-11 COG5158 SEC1 Proteins involved in synaptic transmission and general secretion Sec1 family [Intracellular trafficking and secretion].
rpsblast_kog gnl|CDD|36516 8 178 + 171 Gaps:26 32.50 600 33.85 1e-33 KOG1302 KOG1302 KOG1302 Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking secretion and vesicular transport].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 5 178 174 SSF56815 none none IPR001619
Pfam 39 177 139 PF00995 none Sec1 family IPR001619
PANTHER 8 178 171 PTHR11679:SF1 none none IPR027121
Gene3D 49 153 105 G3DSA:3.90.830.10 none none none
PANTHER 8 178 171 PTHR11679 none none IPR001619

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting