Protein : Qrob_P0598060.2 Q. robur
Protein Identifier  ? Qrob_P0598060.2 Organism . Name  Quercus robur
Score  74.0 Score Type  egn
Protein Description  (M=1) K09291 - nucleoprotein TPR Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1167  
Kegg Orthology  K09291
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006606 protein import into nucleus The directed movement of a protein from the cytoplasm to the nucleus.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103325629 4 1134 + 1131 Gaps:38 54.86 2036 67.41 0.0 nuclear-pore anchor
blastp_kegg lcl|vvi:100251875 4 1166 + 1163 Gaps:39 55.58 2087 65.52 0.0 nuclear-pore anchor-like
blastp_kegg lcl|pxb:103958121 4 1145 + 1142 Gaps:75 54.76 2102 64.47 0.0 nuclear-pore anchor-like
blastp_kegg lcl|mdm:103446019 4 1148 + 1145 Gaps:64 54.48 2087 64.73 0.0 nuclear-pore anchor-like
blastp_kegg lcl|pper:PRUPE_ppa000061mg 21 1134 + 1114 Gaps:57 53.04 2038 68.18 0.0 hypothetical protein
blastp_kegg lcl|pxb:103953298 4 1148 + 1145 Gaps:71 54.82 2094 63.59 0.0 nuclear-pore anchor
blastp_kegg lcl|mdm:103435345 19 1146 + 1128 Gaps:69 53.88 2103 63.46 0.0 nuclear-pore anchor-like
blastp_kegg lcl|pvu:PHAVU_005G045700g 4 1136 + 1133 Gaps:47 54.11 2081 60.39 0.0 hypothetical protein
blastp_kegg lcl|fve:101297619 1 1165 + 1165 Gaps:90 56.31 2101 59.17 0.0 nuclear-pore anchor-like
blastp_kegg lcl|gmx:100788022 4 1135 + 1132 Gaps:44 54.02 2088 59.40 0.0 nuclear-pore anchor-like
blastp_uniprot_sprot sp|A4GSN8|NUA_ARATH 14 1142 + 1129 Gaps:111 53.89 2093 48.49 0.0 Nuclear-pore anchor OS Arabidopsis thaliana GN NUA PE 1 SV 1
blastp_uniprot_sprot sp|F1MA98|TPR_RAT 2 588 + 587 Gaps:71 24.83 2360 25.43 1e-12 Nucleoprotein TPR OS Rattus norvegicus GN Tpr PE 1 SV 1
blastp_uniprot_sprot sp|P12270|TPR_HUMAN 167 588 + 422 Gaps:49 18.07 2363 26.23 5e-12 Nucleoprotein TPR OS Homo sapiens GN TPR PE 1 SV 3
blastp_uniprot_sprot sp|F6ZDS4|TPR_MOUSE 2 588 + 587 Gaps:64 24.15 2431 24.02 6e-12 Nucleoprotein TPR OS Mus musculus GN Tpr PE 1 SV 1
blastp_uniprot_sprot sp|O74424|NU211_SCHPO 7 438 + 432 Gaps:72 22.65 1837 28.61 2e-08 Nucleoporin nup211 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN nup211 PE 1 SV 1
blastp_uniprot_sprot sp|Q5EE04|TPR_XENLA 154 637 + 484 Gaps:43 23.08 1997 24.73 7e-08 Nucleoprotein TPR (Fragment) OS Xenopus laevis GN tpr PE 1 SV 1
blastp_uniprot_sprot sp|A1Z8P9|TPR_DROME 19 600 + 582 Gaps:72 25.23 2346 24.32 1e-07 Nucleoprotein TPR OS Drosophila melanogaster GN Mtor PE 1 SV 1
rpsblast_cdd gnl|CDD|149160 127 256 + 130 none 98.48 132 33.08 1e-19 pfam07926 TPR_MLP1_2 TPR/MLP1/MLP2-like protein. The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features for example they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments and is implicated in nuclear protein import. Moreover its N-terminal region is involved in the activation of oncogenic kinases possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation where they are thought to interact with proteins such as Tel1p and modulate their activity.
rpsblast_cdd gnl|CDD|31389 18 646 + 629 Gaps:156 73.09 1163 39.88 6e-12 COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning].
rpsblast_cdd gnl|CDD|162739 62 707 + 646 Gaps:148 64.04 1179 34.30 4e-11 TIGR02168 SMC_prok_B chromosome segregation protein SMC common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
rpsblast_cdd gnl|CDD|162740 141 651 + 511 Gaps:92 52.92 1164 26.79 3e-09 TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
rpsblast_cdd gnl|CDD|30768 28 638 + 611 Gaps:97 67.73 908 36.59 3e-09 COG0419 SbcC ATPase involved in DNA repair [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|179675 84 647 + 564 Gaps:67 60.34 880 23.73 1e-08 PRK03918 PRK03918 chromosome segregation protein Provisional.
rpsblast_cdd gnl|CDD|173412 23 614 + 592 Gaps:20 28.02 2084 19.01 4e-08 PTZ00121 PTZ00121 MAEBL Provisional.
rpsblast_kog gnl|CDD|39873 23 638 + 616 Gaps:27 33.42 1822 29.39 1e-54 KOG4674 KOG4674 KOG4674 Uncharacterized conserved coiled-coil protein [Function unknown].
rpsblast_kog gnl|CDD|35383 16 646 + 631 Gaps:330 56.27 1930 43.00 9e-17 KOG0161 KOG0161 KOG0161 Myosin class II heavy chain [Cytoskeleton].
rpsblast_kog gnl|CDD|36151 395 646 + 252 Gaps:16 22.15 1174 21.54 2e-12 KOG0933 KOG0933 KOG0933 Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin subunit E) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|35832 183 645 + 463 Gaps:47 32.65 1317 17.67 3e-09 KOG0612 KOG0612 KOG0612 Rho-associated coiled-coil containing protein kinase [Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36213 344 640 + 297 Gaps:13 50.26 581 20.21 1e-07 KOG0995 KOG0995 KOG0995 Centromere-associated protein HEC1 [Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|36214 87 654 + 568 Gaps:55 26.53 1293 32.07 2e-07 KOG0996 KOG0996 KOG0996 Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin subunit C) [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 477 498 22 Coil none none none
Coils 567 602 36 Coil none none none
Coils 154 175 22 Coil none none none
Coils 288 323 36 Coil none none none
PANTHER 19 672 654 PTHR18898 none none none
Coils 519 554 36 Coil none none none
Coils 17 49 33 Coil none none none
Coils 439 470 32 Coil none none none
Coils 185 252 68 Coil none none none
Coils 381 402 22 Coil none none none
Coils 65 104 40 Coil none none none
Coils 617 644 28 Coil none none none
Coils 340 371 32 Coil none none none
Coils 406 427 22 Coil none none none
Pfam 126 256 131 PF07926 none TPR/MLP1/MLP2-like protein IPR012929

0 Localization

0 Qtllist

0 Targeting