Protein : Qrob_P0596940.2 Q. robur
Protein Identifier  ? Qrob_P0596940.2 Organism . Name  Quercus robur
Score  33.2 Score Type  egn
Protein Description  (M=2) PTHR11564:SF5 - SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN Code Enzyme  EC:3.6.5.4
Gene Prediction Quality  validated Protein length 

Sequence

Length: 189  
Kegg Orthology  K03106
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0006614 SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pda:103695525 3 165 + 163 none 30.16 494 91.95 1e-53 signal recognition particle 54 kDa protein 2
blastp_kegg lcl|obr:102715432 3 180 + 178 Gaps:8 30.04 496 90.60 2e-53 signal recognition particle 54 kDa protein 2-like
blastp_kegg lcl|dosa:Os01t0772800-01 3 180 + 178 Gaps:8 30.04 496 91.28 2e-53 Os01g0772800 Similar to Signal recognition particle 54 kDa protein 2 (SRP54).
blastp_kegg lcl|osa:4324712 3 180 + 178 Gaps:8 30.04 496 91.28 2e-53 Os01g0772800
blastp_kegg lcl|zma:100502496 3 180 + 178 Gaps:8 30.16 494 90.60 2e-53 hypothetical protein
blastp_kegg lcl|zma:100274376 3 180 + 178 Gaps:8 30.04 496 91.28 2e-53 hypothetical protein
blastp_kegg lcl|sbi:SORBI_03g036030 3 180 + 178 Gaps:8 30.04 496 90.60 3e-53 SORBIDRAFT_03g036030 Sb03g036030 hypothetical protein
blastp_kegg lcl|sita:101773390 3 180 + 178 Gaps:8 30.04 496 90.60 3e-53 signal recognition particle 54 kDa protein 2-like
blastp_kegg lcl|cmo:103494661 3 180 + 178 Gaps:8 30.10 495 91.95 5e-53 signal recognition particle 54 kDa protein 2
blastp_kegg lcl|mtr:MTR_4g010050 3 180 + 178 Gaps:8 30.04 496 90.60 6e-53 Signal recognition particle 54 kDa protein
blastp_pdb 2j37_W 3 165 + 163 none 29.56 504 68.46 4e-34 mol:protein length:504 SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN (S
blastp_pdb 3dm5_B 7 163 + 157 none 31.15 443 51.45 4e-26 mol:protein length:443 Signal recognition 54 kDa protein
blastp_pdb 3dm5_A 7 163 + 157 none 31.15 443 51.45 4e-26 mol:protein length:443 Signal recognition 54 kDa protein
blastp_pdb 2v3c_D 10 163 + 154 Gaps:3 31.25 432 55.56 1e-24 mol:protein length:432 SIGNAL RECOGNITION 54 KDA PROTEIN
blastp_pdb 2v3c_C 10 163 + 154 Gaps:3 31.25 432 55.56 1e-24 mol:protein length:432 SIGNAL RECOGNITION 54 KDA PROTEIN
blastp_pdb 3ndb_B 10 163 + 154 Gaps:3 29.74 454 55.56 1e-24 mol:protein length:454 Signal recognition 54 kDa protein
blastp_pdb 1j8m_F 7 94 + 88 Gaps:2 30.30 297 54.44 2e-24 mol:protein length:297 SIGNAL RECOGNITION 54 KDA PROTEIN
blastp_pdb 1j8y_F 7 94 + 88 Gaps:2 30.30 297 54.44 2e-24 mol:protein length:297 SIGNAL RECOGNITION 54 KDA PROTEIN
blastp_pdb 3kl4_A 9 163 + 155 Gaps:2 31.87 433 49.28 5e-22 mol:protein length:433 Signal recognition 54 kDa protein
blastp_pdb 1qzx_B 9 163 + 155 Gaps:2 31.36 440 49.28 5e-22 mol:protein length:440 Signal recognition 54 kDa protein
blastp_uniprot_sprot sp|P49972|SR542_SOLLC 3 165 + 163 none 29.86 499 90.60 7e-53 Signal recognition particle 54 kDa protein 2 OS Solanum lycopersicum PE 2 SV 1
blastp_uniprot_sprot sp|P49967|SR543_ARATH 3 165 + 163 none 30.10 495 87.92 2e-52 Signal recognition particle 54 kDa protein 3 OS Arabidopsis thaliana GN SRP-54C PE 2 SV 2
blastp_uniprot_sprot sp|P49971|SR541_SOLLC 5 166 + 162 none 30.24 496 88.00 5e-52 Signal recognition particle 54 kDa protein 1 OS Solanum lycopersicum PE 3 SV 1
blastp_uniprot_sprot sp|P49968|SR541_HORVU 3 166 + 164 none 29.98 497 85.91 1e-50 Signal recognition particle 54 kDa protein 1 OS Hordeum vulgare GN SRP54-1 PE 2 SV 1
blastp_uniprot_sprot sp|P49969|SR542_HORVU 3 166 + 164 none 29.98 497 85.91 1e-50 Signal recognition particle 54 kDa protein 2 OS Hordeum vulgare GN SRP54-2 PE 2 SV 1
blastp_uniprot_sprot sp|P49966|SR542_ARATH 3 165 + 163 none 25.75 497 85.16 2e-50 Signal recognition particle 54 kDa protein 2 OS Arabidopsis thaliana GN SRP-54B PE 3 SV 2
blastp_uniprot_sprot sp|P37106|SR541_ARATH 3 165 + 163 none 31.11 479 83.89 1e-49 Signal recognition particle 54 kDa protein 1 OS Arabidopsis thaliana GN SRP-54A PE 2 SV 1
blastp_uniprot_sprot sp|P49970|SR543_HORVU 3 166 + 164 none 30.22 493 83.22 9e-48 Signal recognition particle 54 kDa protein 3 OS Hordeum vulgare GN SRP54-3 PE 2 SV 1
blastp_uniprot_sprot sp|O15821|SRP54_ENTHI 3 163 + 161 none 29.16 487 61.97 3e-35 Signal recognition particle 54 kDa protein OS Entamoeba histolytica PE 3 SV 1
blastp_uniprot_sprot sp|Q6AYB5|SRP54_RAT 3 165 + 163 none 29.56 504 68.46 6e-34 Signal recognition particle 54 kDa protein OS Rattus norvegicus GN Srp54 PE 2 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 5 95 91 G3DSA:3.40.50.300 none none IPR027417
Gene3D 114 164 51 G3DSA:3.40.50.300 none none IPR027417
SMART 2 112 111 SM00962 "Reactome:REACT_15380" SRP54-type protein, GTPase domain IPR000897
SUPERFAMILY 3 98 96 SSF52540 none none IPR027417
Pfam 114 163 50 PF00448 "Reactome:REACT_15380" SRP54-type protein, GTPase domain IPR000897
Pfam 5 95 91 PF00448 "Reactome:REACT_15380" SRP54-type protein, GTPase domain IPR000897
SUPERFAMILY 114 165 52 SSF52540 none none IPR027417
PANTHER 3 95 93 PTHR11564:SF5 none none none
PANTHER 3 95 93 PTHR11564 none none none

0 Localization

0 Qtllist

0 Targeting