Protein : Qrob_P0593820.2 Q. robur

Protein Identifier  ? Qrob_P0593820.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) PTHR31062:SF11 - XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 9 (PTHR31062:SF11) Code Enzyme  EC:2.4.1.207
Gene Prediction Quality  validated Protein length 

Sequence

Length: 293  
Kegg Orthology  K08235

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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0005618 cell wall The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
GO:0010411 xyloglucan metabolic process The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants.
GO:0006073 cellular glucan metabolic process The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues.
GO:0016762 xyloglucan:xyloglucosyl transferase activity Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan.
GO:0048046 apoplast The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
GO:0042546 cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa009365mg 1 290 + 290 Gaps:4 98.98 295 64.04 2e-137 hypothetical protein
blastp_kegg lcl|fve:101307941 1 290 + 290 Gaps:3 98.98 294 63.92 4e-137 probable xyloglucan endotransglucosylase/hydrolase protein 10-like
blastp_kegg lcl|gmx:100793169 1 290 + 290 Gaps:5 98.99 296 63.48 3e-134 probable xyloglucan endotransglucosylase/hydrolase protein 10-like
blastp_kegg lcl|pmum:103335018 1 290 + 290 Gaps:5 98.98 294 63.92 3e-134 probable xyloglucan endotransglucosylase/hydrolase protein 10
blastp_kegg lcl|pop:POPTR_0009s08710g 1 290 + 290 Gaps:3 98.98 294 62.54 4e-134 POPTRDRAFT_557559 xyloglucan endotransglucosylase/hydrolase protein 10 precursor
blastp_kegg lcl|vvi:100261688 1 288 + 288 Gaps:4 98.31 295 63.45 4e-134 probable xyloglucan endotransglucosylase/hydrolase protein 10-like
blastp_kegg lcl|pxb:103938262 1 290 + 290 Gaps:6 98.98 295 63.36 1e-132 probable xyloglucan endotransglucosylase/hydrolase protein 10
blastp_kegg lcl|csv:101225664 8 290 + 283 Gaps:3 92.21 308 65.14 2e-132 probable xyloglucan endotransglucosylase/hydrolase protein 10-like
blastp_kegg lcl|csv:101222196 8 290 + 283 Gaps:3 92.21 308 65.14 2e-132 probable xyloglucan endotransglucosylase/hydrolase protein 10-like
blastp_kegg lcl|cmo:103494840 1 290 + 290 Gaps:4 95.74 305 64.38 2e-132 probable xyloglucan endotransglucosylase/hydrolase protein 10
blastp_pdb 1un1_B 31 288 + 258 Gaps:2 92.09 278 51.95 5e-94 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1un1_A 31 288 + 258 Gaps:2 92.09 278 51.95 5e-94 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1umz_B 31 288 + 258 Gaps:2 92.09 278 51.95 5e-94 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 1umz_A 31 288 + 258 Gaps:2 92.09 278 51.95 5e-94 mol:protein length:278 XYLOGLUCAN ENDOTRANSGLYCOSYLASE
blastp_pdb 2uwb_B 57 288 + 232 Gaps:12 83.90 267 42.41 2e-54 mol:protein length:267 CELLULASE
blastp_pdb 2uwb_A 57 288 + 232 Gaps:12 83.90 267 42.41 2e-54 mol:protein length:267 CELLULASE
blastp_pdb 2vh9_B 57 288 + 232 Gaps:12 77.24 290 42.41 5e-54 mol:protein length:290 CELLULASE
blastp_pdb 2vh9_A 57 288 + 232 Gaps:12 77.24 290 42.41 5e-54 mol:protein length:290 CELLULASE
blastp_pdb 2uwc_B 57 288 + 232 Gaps:17 84.50 271 41.92 3e-52 mol:protein length:271 CELLULASE
blastp_pdb 2uwc_A 57 288 + 232 Gaps:17 84.50 271 41.92 3e-52 mol:protein length:271 CELLULASE
blastp_uniprot_sprot sp|Q9ZVK1|XTH10_ARATH 1 290 + 290 Gaps:8 99.00 299 57.43 6e-121 Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS Arabidopsis thaliana GN XTH10 PE 2 SV 1
blastp_uniprot_sprot sp|Q41542|XTH_WHEAT 31 288 + 258 Gaps:2 87.37 293 52.34 5e-97 Probable xyloglucan endotransglucosylase/hydrolase OS Triticum aestivum GN XTH PE 2 SV 1
blastp_uniprot_sprot sp|Q38907|XTH25_ARATH 13 288 + 276 Gaps:11 96.83 284 51.27 6e-92 Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS Arabidopsis thaliana GN XTH25 PE 2 SV 2
blastp_uniprot_sprot sp|Q9XIW1|XTH5_ARATH 8 288 + 281 Gaps:9 94.88 293 50.00 8e-90 Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS Arabidopsis thaliana GN XTH5 PE 2 SV 1
blastp_uniprot_sprot sp|Q41638|XTHA_PHAAN 9 289 + 281 Gaps:6 96.92 292 48.06 4e-89 Xyloglucan endotransglucosylase/hydrolase protein A OS Phaseolus angularis GN XTHA PE 1 SV 1
blastp_uniprot_sprot sp|Q8LF99|XTH6_ARATH 8 288 + 281 Gaps:5 94.52 292 47.10 6e-89 Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS Arabidopsis thaliana GN XTH6 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LG58|XTH16_ARATH 14 288 + 275 Gaps:5 95.53 291 48.92 2e-88 Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS Arabidopsis thaliana GN XTH16 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LER3|XTH7_ARATH 29 292 + 264 Gaps:2 89.42 293 48.47 2e-88 Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS Arabidopsis thaliana GN XTH7 PE 2 SV 2
blastp_uniprot_sprot sp|Q8L9A9|XTH8_ARATH 1 291 + 291 Gaps:6 96.72 305 44.75 3e-88 Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS Arabidopsis thaliana GN XTH8 PE 2 SV 2
blastp_uniprot_sprot sp|Q39857|XTH_SOYBN 30 288 + 259 Gaps:3 87.46 295 50.39 8e-88 Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS Glycine max GN XTH PE 2 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 24 24 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 28 290 263 G3DSA:2.60.120.200 none none IPR013320
SUPERFAMILY 31 290 260 SSF49899 none none IPR013320
Phobius 1 7 7 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 8 19 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 25 292 268 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 20 24 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PIRSF 1 292 292 PIRSF005604 none none IPR016455
Pfam 33 213 181 PF00722 none Glycosyl hydrolases family 16 IPR000757
PRINTS 84 100 17 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
PRINTS 122 135 14 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
PRINTS 140 157 18 PR00737 none Glycosyl hydrolase family 16 signature IPR008264
Pfam 237 288 52 PF06955 none Xyloglucan endo-transglycosylase (XET) C-terminus IPR010713
PANTHER 9 292 284 PTHR31062:SF11 none none none
PANTHER 9 292 284 PTHR31062 none none none

3 Localization

Analysis Start End Length
TMHMM 150 172 22
SignalP_EUK 1 24 23
TMHMM 7 29 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting