Protein : Qrob_P0592940.2 Q. robur
Protein Identifier  ? Qrob_P0592940.2 Organism . Name  Quercus robur
Score  18.4 Score Type  egn
Protein Description  (M=2) PF00646//PF03030//PF08387 - F-box domain // Inorganic H+ pyrophosphatase // FBD Gene Prediction Quality  validated
Protein length 

Sequence

Length: 629  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004427 inorganic diphosphatase activity Catalysis of the reaction: diphosphate + H(2)O = H(+) + 2 phosphate.
GO:0009678 hydrogen-translocating pyrophosphatase activity Catalysis of the hydrolysis of pyrophosphate, which generates a proton motive force.
GO:0015992 proton transport The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101292189 33 474 + 442 Gaps:47 86.13 512 30.84 5e-39 putative F-box/FBD/LRR-repeat protein At1g78760-like
blastp_kegg lcl|tcc:TCM_031423 36 475 + 440 Gaps:54 94.43 449 34.43 1e-38 F-box/RNI/FBD-like domains-containing protein putative
blastp_kegg lcl|pxb:103926900 24 474 + 451 Gaps:62 99.78 456 31.43 5e-37 F-box/LRR-repeat protein At4g14103-like
blastp_kegg lcl|pxb:103960072 36 474 + 439 Gaps:51 96.58 439 33.25 1e-35 FBD-associated F-box protein At4g10400-like
blastp_kegg lcl|mdm:103432206 36 474 + 439 Gaps:55 96.58 439 33.49 2e-35 FBD-associated F-box protein At4g10400-like
blastp_kegg lcl|fve:101307404 35 473 + 439 Gaps:47 97.09 447 31.80 3e-35 putative F-box/FBD/LRR-repeat protein At1g78760-like
blastp_kegg lcl|pxb:103934882 36 449 + 414 Gaps:55 96.90 451 30.21 2e-34 FBD-associated F-box protein At5g60610-like
blastp_kegg lcl|mdm:103426418 35 474 + 440 Gaps:75 97.89 475 30.11 1e-33 F-box/FBD/LRR-repeat protein At4g00160-like
blastp_kegg lcl|brp:103856930 36 474 + 439 Gaps:48 99.51 411 34.23 2e-33 FBD-associated F-box protein At5g56370
blastp_kegg lcl|pxb:103931550 35 474 + 440 Gaps:83 97.89 475 30.11 4e-33 F-box/LRR-repeat protein At3g58900-like
blastp_pdb 4a01_B 531 622 + 92 Gaps:34 18.15 766 51.80 1e-09 mol:protein length:766 PROTON PYROPHOSPHATASE
blastp_pdb 4a01_A 531 622 + 92 Gaps:34 18.15 766 51.80 1e-09 mol:protein length:766 PROTON PYROPHOSPHATASE
blastp_uniprot_sprot sp|Q9FM94|FBD21_ARATH 36 474 + 439 Gaps:60 99.52 421 32.94 2e-30 FBD-associated F-box protein At5g56370 OS Arabidopsis thaliana GN At5g56370 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SCQ5|FBD10_ARATH 36 475 + 440 Gaps:46 99.77 427 33.33 1e-29 Putative FBD-associated F-box protein At3g50710 OS Arabidopsis thaliana GN At3g50710 PE 4 SV 1
blastp_uniprot_sprot sp|Q8L7H1|FBL75_ARATH 24 379 + 356 Gaps:39 92.65 381 30.31 5e-26 F-box/LRR-repeat protein At4g14103 OS Arabidopsis thaliana GN At4g14103 PE 2 SV 1
blastp_uniprot_sprot sp|Q94B46|FBL74_ARATH 24 379 + 356 Gaps:56 73.93 468 32.08 2e-25 F-box/LRR-repeat protein At4g14096 OS Arabidopsis thaliana GN At4g14096 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FF58|FBD30_ARATH 36 442 + 407 Gaps:62 99.23 388 33.51 2e-25 FBD-associated F-box protein At5g60610 OS Arabidopsis thaliana GN At5g60610 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXJ7|FBD11_ARATH 28 475 + 448 Gaps:69 99.28 416 32.20 9e-25 FBD-associated F-box protein At3g52670 OS Arabidopsis thaliana GN At3g52670 PE 4 SV 2
blastp_uniprot_sprot sp|Q9FJU2|FBD37_ARATH 38 443 + 406 Gaps:60 96.98 398 30.57 2e-24 Putative FBD-associated F-box protein At5g56700 OS Arabidopsis thaliana GN At5g56700 PE 2 SV 2
blastp_uniprot_sprot sp|Q8H1R7|FDL27_ARATH 36 475 + 440 Gaps:40 99.76 419 29.43 4e-24 F-box/FBD/LRR-repeat protein At4g26340 OS Arabidopsis thaliana GN At4g26340 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FJT1|FBD29_ARATH 35 472 + 438 Gaps:72 94.25 435 30.98 5e-24 Putative FBD-associated F-box protein At5g56820 OS Arabidopsis thaliana GN At5g56820 PE 4 SV 2
blastp_uniprot_sprot sp|Q9C7M1|FBD2_ARATH 35 474 + 440 Gaps:44 98.10 422 28.50 8e-24 Putative FBD-associated F-box protein At1g55030 OS Arabidopsis thaliana GN At1g55030 PE 4 SV 1
rpsblast_cdd gnl|CDD|177897 531 622 + 92 Gaps:34 18.17 765 52.52 2e-14 PLN02255 PLN02255 H(+) -translocating inorganic pyrophosphatase.
rpsblast_cdd gnl|CDD|130174 555 622 + 68 Gaps:7 8.75 697 50.82 8e-11 TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants) archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase like H(+)-ATPase acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
rpsblast_cdd gnl|CDD|202513 585 622 + 38 Gaps:3 6.13 669 51.22 3e-09 pfam03030 H_PPase Inorganic H+ pyrophosphatase. The H+ pyrophosphatase is an transmembrane proton pump involved in establishing the H+ electrochemical potential difference between the vacuole lumen and the cell cytosol. Vacuolar-type H(+)-translocating inorganic pyrophosphatases have long been considered to be restricted to plants and to a few species of photo-trophic bacteria. However in recent investigations these pyrophosphatases have been found in organisms as disparate as thermophilic Archaea and parasitic protists.
rpsblast_cdd gnl|CDD|179102 585 622 + 38 Gaps:3 6.16 666 48.78 2e-08 PRK00733 hppA membrane-bound proton-translocating pyrophosphatase Validated.

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 396 443 48 PF08387 none FBD IPR006566
Pfam 587 622 36 PF03030 "KEGG:00190+3.6.1.1" Inorganic H+ pyrophosphatase IPR004131
PANTHER 1 499 499 PTHR32212:SF56 none none none
Phobius 550 574 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 499 499 PTHR32212 none none none
Pfam 38 73 36 PF00646 none F-box domain IPR001810
Phobius 575 628 54 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 147 378 232 SSF52047 none none none
Gene3D 113 222 110 G3DSA:3.80.10.10 none none none
Gene3D 35 77 43 G3DSA:3.80.10.10 none none none
SMART 403 475 73 SM00579 none domain in FBox and BRCT domain containing plant proteins IPR006566
SUPERFAMILY 35 78 44 SSF81383 none none IPR001810
Phobius 1 549 549 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 35 71 37 PS50181 none F-box domain profile. IPR001810
SMART 41 81 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810

1 Localization

Analysis Start End Length
TMHMM 554 576 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting