Protein : Qrob_P0592830.2 Q. robur
Protein Identifier  ? Qrob_P0592830.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K14763 - H/ACA ribonucleoprotein complex non-core subunit NAF1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 719  
Kegg Orthology  K14763
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0001522 pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103329533 1 718 + 718 Gaps:92 100.00 776 49.87 1e-178 H/ACA ribonucleoprotein complex non-core subunit NAF1
blastp_kegg lcl|pper:PRUPE_ppa001913mg 1 700 + 700 Gaps:104 97.57 742 51.52 1e-169 hypothetical protein
blastp_kegg lcl|pxb:103947848 1 700 + 700 Gaps:115 97.57 741 47.58 3e-156 uncharacterized LOC103947848
blastp_kegg lcl|pop:POPTR_0013s14160g 1 701 + 701 Gaps:79 97.56 697 48.82 8e-154 POPTRDRAFT_571778 hypothetical protein
blastp_kegg lcl|mdm:103404735 291 709 + 419 Gaps:48 58.40 762 57.98 2e-151 uncharacterized LOC103404735
blastp_kegg lcl|mdm:103419816 1 700 + 700 Gaps:108 97.57 742 48.48 5e-150 uncharacterized LOC103419816
blastp_kegg lcl|mdm:103435460 1 700 + 700 Gaps:108 97.57 742 48.48 5e-150 uncharacterized LOC103435460
blastp_kegg lcl|pxb:103942248 307 718 + 412 Gaps:59 59.73 735 59.23 3e-148 uncharacterized LOC103942248
blastp_kegg lcl|tcc:TCM_007972 1 702 + 702 Gaps:66 82.15 678 54.04 8e-143 Nuclear assembly factor 1 putative isoform 1
blastp_kegg lcl|rcu:RCOM_1176220 287 699 + 413 Gaps:30 52.80 786 59.28 5e-140 hypothetical protein
blastp_pdb 2eqn_A 319 402 + 84 Gaps:1 80.58 103 33.73 3e-06 mol:protein length:103 Hypothetical protein LOC92345
blastp_pdb 2v3m_F 308 393 + 86 Gaps:4 67.18 131 34.09 8e-06 mol:protein length:131 NAF1
blastp_pdb 2v3m_E 308 393 + 86 Gaps:4 67.18 131 34.09 8e-06 mol:protein length:131 NAF1
blastp_pdb 2v3m_D 308 393 + 86 Gaps:4 67.18 131 34.09 8e-06 mol:protein length:131 NAF1
blastp_pdb 2v3m_C 308 393 + 86 Gaps:4 67.18 131 34.09 8e-06 mol:protein length:131 NAF1
blastp_pdb 2v3m_B 308 393 + 86 Gaps:4 67.18 131 34.09 8e-06 mol:protein length:131 NAF1
blastp_pdb 2v3m_A 308 393 + 86 Gaps:4 67.18 131 34.09 8e-06 mol:protein length:131 NAF1
blastp_uniprot_sprot sp|Q52KK4|NAF1_RAT 286 468 + 183 Gaps:8 41.36 457 35.45 2e-18 H/ACA ribonucleoprotein complex non-core subunit NAF1 OS Rattus norvegicus GN Naf1 PE 2 SV 1
blastp_uniprot_sprot sp|O14360|NAF1_SCHPO 296 575 + 280 Gaps:31 56.78 516 31.40 2e-17 H/ACA ribonucleoprotein complex non-core subunit NAF1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN naf1 PE 1 SV 1
blastp_uniprot_sprot sp|Q96HR8|NAF1_HUMAN 292 468 + 177 Gaps:8 37.04 494 34.43 5e-17 H/ACA ribonucleoprotein complex non-core subunit NAF1 OS Homo sapiens GN NAF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q3UMQ8|NAF1_MOUSE 292 468 + 177 Gaps:8 37.42 489 34.43 1e-16 H/ACA ribonucleoprotein complex non-core subunit NAF1 OS Mus musculus GN Naf1 PE 1 SV 2
blastp_uniprot_sprot sp|P53919|NAF1_YEAST 295 614 + 320 Gaps:63 68.09 492 33.13 3e-11 H/ACA ribonucleoprotein complex non-core subunit NAF1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN NAF1 PE 1 SV 1
blastp_uniprot_sprot sp|A6ZRW0|NAF1_YEAS7 295 614 + 320 Gaps:59 68.09 492 32.54 3e-11 H/ACA ribonucleoprotein complex non-core subunit NAF1 OS Saccharomyces cerevisiae (strain YJM789) GN NAF1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9VJ62|NAF1_DROME 310 440 + 131 Gaps:4 23.58 564 28.57 8e-06 H/ACA ribonucleoprotein complex non-core subunit NAF1 OS Drosophila melanogaster GN CG10341 PE 1 SV 2
rpsblast_cdd gnl|CDD|190975 313 464 + 152 Gaps:3 99.35 154 36.60 3e-28 pfam04410 Gar1 Gar1/Naf1 RNA binding region. Gar1 is a small nucleolar RNP that is required for pre-mRNA processing and pseudouridylation. It is co-immunoprecipitated with the H/ACA families of snoRNAs. This family represents the conserved central region of Gar1. This region is necessary and sufficient for normal cell growth and specifically binds two snoRNAs snR10 and snR30. This region is also necessary for nucleolar targeting and it is thought that the protein is co-transported to the nucleolus as part of a nucleoprotein complex. In humans Gar1 is also component of telomerase in vivo. Naf1 is an essentail protein that plays a role in ribosome biogenesis modification of spliceosomal small nuclear RNAs and telomere synthesis and is homologous to Gar1.
rpsblast_cdd gnl|CDD|162113 91 306 + 216 Gaps:23 19.62 1096 26.51 6e-09 TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
rpsblast_cdd gnl|CDD|34868 126 284 + 159 Gaps:13 3.48 4600 21.88 1e-07 COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only].
rpsblast_kog gnl|CDD|37447 103 610 + 508 Gaps:54 99.79 483 28.01 2e-47 KOG2236 KOG2236 KOG2236 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|37262 153 339 + 187 Gaps:26 14.27 1128 26.71 7e-08 KOG2051 KOG2051 KOG2051 Nonsense-mediated mRNA decay 2 protein [RNA processing and modification].
rpsblast_kog gnl|CDD|37467 190 305 + 116 Gaps:4 17.55 661 23.28 6e-07 KOG2256 KOG2256 KOG2256 Predicted protein involved in nuclear export of pre-ribosomes [Translation ribosomal structure and biogenesis].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 315 464 150 PF04410 none Gar1/Naf1 RNA binding region IPR007504
Gene3D 330 402 73 G3DSA:2.40.10.230 none none none
SUPERFAMILY 335 398 64 SSF50447 none none IPR009000
PANTHER 236 690 455 PTHR31633 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting