Protein : Qrob_P0591820.2 Q. robur
Protein Identifier  ? Qrob_P0591820.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=8) KOG0968 - DNA polymerase zeta catalytic subunit [Replication recombination and repair]. Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 289  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0008408 3'-5' exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103344607 2 256 + 255 Gaps:28 10.49 2699 47.00 1e-65 DNA polymerase zeta catalytic subunit
blastp_kegg lcl|pper:PRUPE_ppa000111mg 2 256 + 255 Gaps:51 14.46 1771 50.00 5e-60 hypothetical protein
blastp_kegg lcl|vvi:100263126 1 255 + 255 Gaps:45 13.69 2002 47.81 5e-59 uncharacterized LOC100263126
blastp_kegg lcl|mdm:103451319 2 255 + 254 Gaps:58 12.67 2068 50.00 5e-57 DNA polymerase zeta catalytic subunit-like
blastp_kegg lcl|mdm:103450935 2 254 + 253 Gaps:58 25.46 1025 48.66 9e-54 DNA polymerase zeta catalytic subunit-like
blastp_kegg lcl|rcu:RCOM_1431670 1 255 + 255 Gaps:40 14.28 2066 42.03 3e-53 DNA polymerase zeta catalytic subunit putative (EC:2.7.7.7)
blastp_kegg lcl|tcc:TCM_026537 1 255 + 255 Gaps:65 15.14 2035 41.23 3e-50 Recovery protein 3 isoform 1
blastp_kegg lcl|gmx:100777934 1 255 + 255 Gaps:31 13.87 1976 43.80 6e-47 DNA polymerase zeta catalytic subunit-like
blastp_kegg lcl|eus:EUTSA_v10017996mg 22 255 + 234 Gaps:28 13.88 1887 42.37 2e-44 hypothetical protein
blastp_kegg lcl|cam:101503172 35 255 + 221 Gaps:41 13.38 1914 44.14 3e-44 DNA polymerase zeta catalytic subunit-like
blastp_uniprot_sprot sp|Q766Z3|REV3_ARATH 34 255 + 222 Gaps:38 13.54 1890 40.62 2e-44 DNA polymerase zeta catalytic subunit OS Arabidopsis thaliana GN REV3 PE 2 SV 1
rpsblast_cdd gnl|CDD|99821 151 273 + 123 Gaps:18 58.44 231 28.15 1e-12 cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI ExoII and ExoIII without the four conserved acidic residues that are crucial for metal binding and catalysis.
rpsblast_kog gnl|CDD|36186 42 254 + 213 Gaps:20 15.66 1488 22.75 2e-19 KOG0968 KOG0968 KOG0968 DNA polymerase zeta catalytic subunit [Replication recombination and repair].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 158 283 126 G3DSA:3.30.420.10 none none IPR012337
SUPERFAMILY 159 256 98 SSF53098 none none IPR012337
Pfam 174 255 82 PF03104 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA polymerase family B, exonuclease domain IPR006133

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting