Protein : Qrob_P0591700.2 Q. robur
Protein Identifier  ? Qrob_P0591700.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=8) KOG0968 - DNA polymerase zeta catalytic subunit [Replication recombination and repair]. Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 234  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0008408 3'-5' exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103344607 33 210 + 178 Gaps:22 7.41 2699 53.00 2e-53 DNA polymerase zeta catalytic subunit
blastp_kegg lcl|pper:PRUPE_ppa000111mg 53 210 + 158 Gaps:22 10.16 1771 55.00 2e-49 hypothetical protein
blastp_kegg lcl|tcc:TCM_026537 11 213 + 203 Gaps:44 10.86 2035 48.87 2e-47 Recovery protein 3 isoform 1
blastp_kegg lcl|vvi:100263126 49 210 + 162 Gaps:29 9.54 2002 51.83 9e-47 uncharacterized LOC100263126
blastp_kegg lcl|mdm:103451319 81 213 + 133 Gaps:9 6.87 2068 62.68 4e-45 DNA polymerase zeta catalytic subunit-like
blastp_kegg lcl|mdm:103450935 81 210 + 130 Gaps:9 13.56 1025 61.87 1e-42 DNA polymerase zeta catalytic subunit-like
blastp_kegg lcl|cam:101503172 37 210 + 174 Gaps:21 9.87 1914 49.21 7e-41 DNA polymerase zeta catalytic subunit-like
blastp_kegg lcl|pop:POPTR_0013s02320g 81 210 + 130 Gaps:9 7.49 1855 58.99 9e-41 POPTRDRAFT_240745 POPTRDRAFT_729606 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1431670 66 210 + 145 Gaps:9 7.45 2066 53.90 1e-40 DNA polymerase zeta catalytic subunit putative (EC:2.7.7.7)
blastp_kegg lcl|cit:102622531 47 210 + 164 Gaps:29 10.67 1808 45.60 3e-40 DNA polymerase zeta catalytic subunit-like
blastp_uniprot_sprot sp|Q766Z3|REV3_ARATH 39 210 + 172 Gaps:32 10.79 1890 40.69 9e-38 DNA polymerase zeta catalytic subunit OS Arabidopsis thaliana GN REV3 PE 2 SV 1
rpsblast_cdd gnl|CDD|99821 118 210 + 93 Gaps:7 43.29 231 29.00 3e-12 cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI ExoII and ExoIII without the four conserved acidic residues that are crucial for metal binding and catalysis.
rpsblast_kog gnl|CDD|36186 40 218 + 179 Gaps:26 13.24 1488 27.92 2e-21 KOG0968 KOG0968 KOG0968 DNA polymerase zeta catalytic subunit [Replication recombination and repair].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 119 213 95 SSF53098 none none IPR012337
Phobius 1 17 17 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 136 201 66 PF03104 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA polymerase family B, exonuclease domain IPR006133
Phobius 18 233 216 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 13 17 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 4 12 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Gene3D 119 212 94 G3DSA:3.30.420.10 none none IPR012337

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting