Protein : Qrob_P0590250.2 Q. robur
Protein Identifier  ? Qrob_P0590250.2 Organism . Name  Quercus robur
Score  93.4 Score Type  egn
Protein Description  (M=2) K03248 - translation initiation factor eIF-3 subunit 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 288  
Kegg Orthology  K03248
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0005852 eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_042695 1 287 + 287 Gaps:26 100.00 297 72.05 2e-142 Eukaryotic translation initiation factor 3G1
blastp_kegg lcl|pop:POPTR_0010s20650g 19 287 + 269 Gaps:19 97.28 294 70.98 2e-141 POPTRDRAFT_659628 eukaryotic translation initiation factor 3G family protein
blastp_kegg lcl|vvi:100265545 20 287 + 268 Gaps:20 95.95 296 70.77 3e-137 eukaryotic translation initiation factor 3 subunit G-B-like
blastp_kegg lcl|cic:CICLE_v10028957mg 18 287 + 270 Gaps:20 97.61 293 69.93 6e-136 hypothetical protein
blastp_kegg lcl|cit:102611620 18 287 + 270 Gaps:20 97.61 293 70.28 7e-136 eukaryotic translation initiation factor 3 subunit G-like
blastp_kegg lcl|tcc:TCM_041757 19 287 + 269 Gaps:20 98.96 288 70.18 1e-135 Eukaryotic translation initiation factor 3G1
blastp_kegg lcl|mus:103991699 22 287 + 266 Gaps:21 97.91 287 71.89 2e-135 eukaryotic translation initiation factor 3 subunit G {ECO:0000255|HAMAP-Rule:MF_03006}-like
blastp_kegg lcl|pop:POPTR_0008s06040g 39 287 + 249 Gaps:18 91.13 293 71.54 4e-133 POPTRDRAFT_720139 eukaryotic translation initiation factor 3G family protein
blastp_kegg lcl|sly:101267876 22 287 + 266 Gaps:18 95.59 295 68.44 2e-132 eukaryotic translation initiation factor 3 subunit G-like
blastp_kegg lcl|mtr:MTR_8g107310 22 286 + 265 Gaps:18 96.23 292 70.82 2e-132 Eukaryotic translation initiation factor 3 subunit
blastp_pdb 2cq0_A 200 287 + 88 none 85.44 103 59.09 2e-30 mol:protein length:103 Eukaryotic translation initiation factor 3 su
blastp_pdb 1x5s_A 203 287 + 85 none 83.33 102 40.00 6e-12 mol:protein length:102 Cold-inducible RNA-binding protein
blastp_pdb 2rne_A 203 283 + 81 none 70.43 115 38.27 7e-11 mol:protein length:115 Tia1 protein
blastp_pdb 2dgo_A 203 283 + 81 none 70.43 115 38.27 7e-11 mol:protein length:115 Cytotoxic granule-associated RNA binding prot
blastp_pdb 3hi9_D 210 284 + 75 none 89.29 84 40.00 2e-10 mol:protein length:84 ELAV-like protein 1
blastp_pdb 3hi9_C 210 284 + 75 none 89.29 84 40.00 2e-10 mol:protein length:84 ELAV-like protein 1
blastp_pdb 3hi9_B 210 284 + 75 none 89.29 84 40.00 2e-10 mol:protein length:84 ELAV-like protein 1
blastp_pdb 3hi9_A 210 284 + 75 none 89.29 84 40.00 2e-10 mol:protein length:84 ELAV-like protein 1
blastp_pdb 2dh7_A 203 283 + 81 none 77.14 105 38.27 3e-10 mol:protein length:105 Nucleolysin TIAR
blastp_pdb 1g2e_A 210 286 + 77 none 82.04 167 37.23 3e-09 mol:protein length:167 PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD
blastp_uniprot_sprot sp|Q28CY2|EIF3G_XENTR 22 287 + 266 Gaps:52 97.42 310 37.42 3e-50 Eukaryotic translation initiation factor 3 subunit G OS Xenopus tropicalis GN eif3g PE 2 SV 1
blastp_uniprot_sprot sp|Q641B2|EI3GB_XENLA 22 287 + 266 Gaps:58 97.40 308 37.67 1e-49 Eukaryotic translation initiation factor 3 subunit G-B OS Xenopus laevis GN eif3g-b PE 2 SV 1
blastp_uniprot_sprot sp|Q6DJI8|EI3GA_XENLA 22 287 + 266 Gaps:56 97.40 308 38.33 3e-49 Eukaryotic translation initiation factor 3 subunit G-A OS Xenopus laevis GN eif3g-a PE 2 SV 1
blastp_uniprot_sprot sp|Q6DRC4|EIF3G_DANRE 22 287 + 266 Gaps:42 96.93 293 39.08 3e-49 Eukaryotic translation initiation factor 3 subunit G OS Danio rerio GN eif3g PE 1 SV 1
blastp_uniprot_sprot sp|A7SKE9|EIF3G_NEMVE 21 286 + 266 Gaps:33 96.26 294 40.99 7e-49 Eukaryotic translation initiation factor 3 subunit G OS Nematostella vectensis GN v1g171563 PE 3 SV 1
blastp_uniprot_sprot sp|O75821|EIF3G_HUMAN 54 287 + 234 Gaps:39 80.31 320 39.30 3e-46 Eukaryotic translation initiation factor 3 subunit G OS Homo sapiens GN EIF3G PE 1 SV 2
blastp_uniprot_sprot sp|Q9Z1D1|EIF3G_MOUSE 54 287 + 234 Gaps:39 80.31 320 38.91 4e-46 Eukaryotic translation initiation factor 3 subunit G OS Mus musculus GN Eif3g PE 1 SV 2
blastp_uniprot_sprot sp|Q3ZC12|EIF3G_BOVIN 54 287 + 234 Gaps:39 80.31 320 38.91 8e-46 Eukaryotic translation initiation factor 3 subunit G OS Bos taurus GN EIF3G PE 2 SV 1
blastp_uniprot_sprot sp|Q5RK09|EIF3G_RAT 54 287 + 234 Gaps:39 80.31 320 38.91 2e-45 Eukaryotic translation initiation factor 3 subunit G OS Rattus norvegicus GN Eif3g PE 2 SV 1
blastp_uniprot_sprot sp|Q1HQN4|EIF3G_AEDAE 22 286 + 265 Gaps:32 96.69 272 37.26 2e-44 Eukaryotic translation initiation factor 3 subunit G OS Aedes aegypti GN eIF3-S4-1 PE 2 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 208 274 67 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
PANTHER 8 287 280 PTHR10352 none none IPR017334
SUPERFAMILY 192 286 95 SSF54928 none none none
ProSiteProfiles 206 284 79 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
PIRSF 15 287 273 PIRSF037949 none none IPR017334
Hamap 22 286 265 MF_03006 none Eukaryotic translation initiation factor 3 subunit G [EIF3G]. IPR017334
Pfam 42 166 125 PF12353 none Eukaryotic translation initiation factor 3 subunit G IPR024675
SMART 207 280 74 SM00360 none RNA recognition motif IPR000504
Gene3D 202 286 85 G3DSA:3.30.70.330 none none IPR012677

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9

0 Targeting