Protein : Qrob_P0589790.2 Q. robur
Protein Identifier  ? Qrob_P0589790.2 Organism . Name  Quercus robur
Score  78.2 Score Type  egn
Protein Description  (M=1) KOG0078//KOG0079//KOG0081//KOG0084//KOG0087//KOG0088//KOG0092//KOG0094//KOG0098//KOG0394 - GTP-binding protein SEC4 small G protein superfamily and related Ras family GTP-binding proteins [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport]. // GTP-binding protein H-ray small G protein superfamily [General function prediction only]. // GTPase Rab27 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab1/YPT1 small G protein superfamily and related GTP-binding proteins [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport]. // GTPase Rab11/YPT3 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab21 small G protein superfamily [General function prediction only]. // GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab6/YPT6/Ryh1 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab2 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // Ras-related GTPase [General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 285  
Kegg Orthology  K07897
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0 Synonyms

9 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0007264 small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO:0006913 nucleocytoplasmic transport The directed movement of molecules between the nucleus and the cytoplasm.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_006904 96 284 + 189 none 91.75 206 94.18 4e-128 RAB GTPase G3F isoform 1
blastp_kegg lcl|pop:POPTR_0009s11790g 96 284 + 189 none 91.75 206 94.18 2e-127 POPTRDRAFT_722063 RAS-related GTP-binding family protein
blastp_kegg lcl|pop:POPTR_0004s16080g 96 284 + 189 none 91.75 206 93.65 4e-127 POPTRDRAFT_712938 RAS-related GTP-binding family protein
blastp_kegg lcl|sot:102577689 96 284 + 189 none 91.75 206 93.12 1e-126 uncharacterized LOC102577689
blastp_kegg lcl|sly:101263553 96 284 + 189 none 91.75 206 93.12 1e-126 ras-related protein RABG3f-like
blastp_kegg lcl|rcu:RCOM_1674910 96 284 + 189 none 91.75 206 93.12 3e-126 protein with unknown function (EC:3.1.4.12)
blastp_kegg lcl|cic:CICLE_v10029292mg 96 284 + 189 none 91.75 206 92.59 5e-126 hypothetical protein
blastp_kegg lcl|cit:102609040 96 284 + 189 none 91.75 206 92.59 5e-126 ras-related protein Rab7-like
blastp_kegg lcl|pmum:103335638 96 284 + 189 none 91.75 206 92.59 9e-126 ras-related protein Rab7
blastp_kegg lcl|pper:PRUPE_ppa011555mg 96 284 + 189 none 91.75 206 92.59 9e-126 hypothetical protein
blastp_pdb 1vg8_D 96 284 + 189 Gaps:5 90.82 207 65.96 3e-85 mol:protein length:207 Ras-related protein Rab-7
blastp_pdb 1vg8_C 96 284 + 189 Gaps:5 90.82 207 65.96 3e-85 mol:protein length:207 Ras-related protein Rab-7
blastp_pdb 1vg8_B 96 284 + 189 Gaps:5 90.82 207 65.96 3e-85 mol:protein length:207 Ras-related protein Rab-7
blastp_pdb 1vg8_A 96 284 + 189 Gaps:5 90.82 207 65.96 3e-85 mol:protein length:207 Ras-related protein Rab-7
blastp_pdb 1vg0_B 96 284 + 189 Gaps:5 90.82 207 65.96 3e-85 mol:protein length:207 Ras-related protein Rab-7
blastp_pdb 3law_E 96 284 + 189 Gaps:5 90.82 207 65.96 1e-84 mol:protein length:207 Ras-related protein Rab-7a
blastp_pdb 3law_D 96 284 + 189 Gaps:5 90.82 207 65.96 1e-84 mol:protein length:207 Ras-related protein Rab-7a
blastp_pdb 3law_C 96 284 + 189 Gaps:5 90.82 207 65.96 1e-84 mol:protein length:207 Ras-related protein Rab-7a
blastp_pdb 3law_B 96 284 + 189 Gaps:5 90.82 207 65.96 1e-84 mol:protein length:207 Ras-related protein Rab-7a
blastp_pdb 3law_A 96 284 + 189 Gaps:5 90.82 207 65.96 1e-84 mol:protein length:207 Ras-related protein Rab-7a
blastp_uniprot_sprot sp|P31022|RAB7_PEA 96 284 + 189 none 91.75 206 89.42 4e-124 Ras-related protein Rab7 OS Pisum sativum PE 2 SV 1
blastp_uniprot_sprot sp|Q9LS94|RAG3F_ARATH 96 284 + 189 none 91.75 206 89.42 3e-123 Ras-related protein RABG3f OS Arabidopsis thaliana GN RABG3F PE 2 SV 1
blastp_uniprot_sprot sp|O24461|RAB7_PRUAR 96 284 + 189 Gaps:1 91.79 207 87.37 5e-119 Ras-related protein Rab7 OS Prunus armeniaca PE 2 SV 1
blastp_uniprot_sprot sp|Q9XI98|RAG3E_ARATH 96 284 + 189 none 91.75 206 85.71 8e-119 Ras-related protein RABG3e OS Arabidopsis thaliana GN RABG3E PE 2 SV 1
blastp_uniprot_sprot sp|Q9XER8|RAB7_GOSHI 96 284 + 189 Gaps:1 91.79 207 87.37 1e-118 Ras-related protein Rab7 OS Gossypium hirsutum GN RAB7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LW76|RAG3C_ARATH 96 284 + 189 none 91.75 206 83.60 3e-116 Ras-related protein RABG3c OS Arabidopsis thaliana GN RABG3C PE 2 SV 1
blastp_uniprot_sprot sp|Q9C820|RAG3D_ARATH 96 284 + 189 none 91.75 206 85.19 4e-116 Ras-related protein RABG3d OS Arabidopsis thaliana GN RABG3D PE 2 SV 1
blastp_uniprot_sprot sp|Q40787|RAB7_CENCI 96 282 + 187 Gaps:1 91.26 206 85.64 4e-116 Ras-related protein Rab7 OS Cenchrus ciliaris PE 2 SV 1
blastp_uniprot_sprot sp|P93267|RAB7_MESCR 96 284 + 189 Gaps:1 91.79 207 79.47 8e-110 Ras-related protein Rab7A OS Mesembryanthemum crystallinum PE 2 SV 1
blastp_uniprot_sprot sp|Q39573|YPTC5_CHLRE 96 282 + 187 Gaps:1 91.26 206 67.02 1e-93 GTP-binding protein YPTC5 OS Chlamydomonas reinhardtii GN YPTC5 PE 3 SV 1

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 46 257 212 SM00174 "Reactome:REACT_11044" Rho (Ras homology) subfamily of Ras-like small GTPases IPR003578
Phobius 87 284 198 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 66 86 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 100 255 156 PF00071 none Ras family IPR001806
Gene3D 100 267 168 G3DSA:3.40.50.300 none none IPR027417
PANTHER 51 61 11 PTHR24073:SF375 none none none
Phobius 28 51 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 78 284 207 PS51419 none small GTPase Rab1 family profile. none
SUPERFAMILY 51 62 12 SSF52540 none none IPR027417
SUPERFAMILY 109 260 152 SSF52540 none none IPR027417
PANTHER 1 18 18 PTHR24073:SF375 none none none
PANTHER 108 284 177 PTHR24073:SF375 none none none
Phobius 52 65 14 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 100 257 158 SM00175 none Rab subfamily of small GTPases IPR003579
Phobius 1 27 27 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PRINTS 232 254 23 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 9 30 22 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 194 207 14 PR00449 none Transforming protein P21 ras signature IPR001806
SMART 93 283 191 SM00176 none Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases IPR002041
TIGRFAM 104 250 147 TIGR00231 none small_GTP: small GTP-binding protein domain IPR005225
SMART 98 257 160 SM00173 none Ras subfamily of RAS small GTPases IPR020849
PANTHER 51 61 11 PTHR24073 none none none
PANTHER 1 18 18 PTHR24073 none none none
PANTHER 108 284 177 PTHR24073 none none none

2 Localization

Analysis Start End Length
TMHMM 64 86 22
TMHMM 29 51 22

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting