Protein : Qrob_P0589770.2 Q. robur
Protein Identifier  ? Qrob_P0589770.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K17267 - coatomer protein complex, subunit gamma Gene Prediction Quality  validated
Protein length 

Sequence

Length: 887  
Kegg Orthology  K17267
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0005198 structural molecule activity The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell.
GO:0030117 membrane coat Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.
GO:0030126 COPI vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10027789mg 1 886 + 886 none 100.00 886 92.21 0.0 hypothetical protein
blastp_kegg lcl|cit:102608367 1 886 + 886 none 100.00 886 92.21 0.0 coatomer subunit gamma-2-like
blastp_kegg lcl|cmo:103489587 1 886 + 886 Gaps:1 100.00 887 92.45 0.0 coatomer subunit gamma
blastp_kegg lcl|vvi:100853178 1 886 + 886 Gaps:1 100.00 887 93.46 0.0 coatomer subunit gamma-2-like
blastp_kegg lcl|csv:101218494 1 886 + 886 Gaps:1 100.00 887 92.00 0.0 coatomer subunit gamma-like
blastp_kegg lcl|pop:POPTR_0004s16090g 1 884 + 884 Gaps:1 99.77 885 92.19 0.0 POPTRDRAFT_818088 hypothetical protein
blastp_kegg lcl|fve:101298124 1 886 + 886 Gaps:1 100.00 887 92.00 0.0 coatomer subunit gamma-like
blastp_kegg lcl|gmx:100789362 1 886 + 886 Gaps:1 100.00 887 92.11 0.0 coatomer subunit gamma-2-like
blastp_kegg lcl|gmx:100791801 1 886 + 886 Gaps:1 100.00 887 91.66 0.0 coatomer subunit gamma-2-like
blastp_kegg lcl|tcc:TCM_006902 1 886 + 886 Gaps:1 100.00 887 92.90 0.0 Coatomer gamma-2 subunit / gamma-2 coat protein / gamma-2 COP putative isoform 1
blastp_pdb 3tjz_E 5 358 + 354 Gaps:6 99.72 355 59.89 6e-134 mol:protein length:355 Coatomer subunit gamma
blastp_pdb 3tjz_B 5 358 + 354 Gaps:6 99.72 355 59.89 6e-134 mol:protein length:355 Coatomer subunit gamma
blastp_pdb 1pzd_A 564 873 + 310 Gaps:11 95.96 322 43.69 2e-73 mol:protein length:322 Coatomer gamma subunit
blastp_pdb 1r4x_A 622 879 + 258 Gaps:7 93.45 275 46.30 9e-66 mol:protein length:275 Coatomer gamma subunit
blastp_pdb 2vgl_B 21 542 + 522 Gaps:61 89.17 591 19.73 4e-09 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkt_E 21 542 + 522 Gaps:61 89.17 591 19.73 4e-09 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkt_B 21 542 + 522 Gaps:61 89.17 591 19.73 4e-09 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkr_E 21 542 + 522 Gaps:61 89.17 591 19.73 4e-09 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkr_B 21 542 + 522 Gaps:61 89.17 591 19.73 4e-09 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2xa7_B 21 542 + 522 Gaps:61 89.02 592 19.73 4e-09 mol:protein length:592 AP-2 COMPLEX SUBUNIT BETA
blastp_uniprot_sprot sp|Q0WW26|COPG_ARATH 1 886 + 886 Gaps:2 100.00 886 86.23 0.0 Coatomer subunit gamma OS Arabidopsis thaliana GN At4g34450 PE 1 SV 2
blastp_uniprot_sprot sp|Q6Z382|COPG2_ORYSJ 1 886 + 886 Gaps:3 100.00 889 86.61 0.0 Coatomer subunit gamma-2 OS Oryza sativa subsp. japonica GN Os07g0201100 PE 2 SV 1
blastp_uniprot_sprot sp|Q8H852|COPG1_ORYSJ 1 886 + 886 Gaps:4 100.00 884 83.26 0.0 Coatomer subunit gamma-1 OS Oryza sativa subsp. japonica GN Os03g0227000 PE 2 SV 2
blastp_uniprot_sprot sp|Q9I8E6|COPG2_TAKRU 5 879 + 875 Gaps:23 99.43 873 54.38 0.0 Coatomer subunit gamma-2 OS Takifugu rubripes GN copg2 PE 3 SV 1
blastp_uniprot_sprot sp|A2VE21|COPG2_BOVIN 5 879 + 875 Gaps:31 99.43 871 54.73 0.0 Coatomer subunit gamma-2 OS Bos taurus GN COPG2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9QXK3|COPG2_MOUSE 5 879 + 875 Gaps:31 99.43 871 54.73 0.0 Coatomer subunit gamma-2 OS Mus musculus GN Copg2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9UBF2|COPG2_HUMAN 5 879 + 875 Gaps:33 99.43 871 54.62 0.0 Coatomer subunit gamma-2 OS Homo sapiens GN COPG2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9PUE4|COPG2_DANRE 5 879 + 875 Gaps:23 99.43 873 53.69 0.0 Coatomer subunit gamma-2 OS Danio rerio GN copg2 PE 2 SV 2
blastp_uniprot_sprot sp|Q66JI9|COPG2_XENTR 5 879 + 875 Gaps:22 99.43 872 54.90 0.0 Coatomer subunit gamma-2 OS Xenopus tropicalis GN copg2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y678|COPG1_HUMAN 5 879 + 875 Gaps:20 99.43 874 53.74 0.0 Coatomer subunit gamma-1 OS Homo sapiens GN COPG1 PE 1 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 771 883 113 SSF55711 none none IPR009028
Gene3D 28 599 572 G3DSA:1.25.10.10 none none IPR011989
Pfam 620 767 148 PF08752 none Coatomer gamma subunit appendage platform subdomain IPR013040
PIRSF 7 884 878 PIRSF037093 none none IPR017106
SUPERFAMILY 29 579 551 SSF48371 none none IPR016024
SUPERFAMILY 613 770 158 SSF49348 none none IPR013041
Pfam 29 538 510 PF01602 none Adaptin N terminal region IPR002553
PANTHER 1 884 884 PTHR10261 none none IPR017106
Gene3D 617 766 150 G3DSA:2.60.40.1480 none none IPR013040
Gene3D 769 884 116 G3DSA:3.30.310.30 none none IPR015873

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting