Protein : Qrob_P0589550.2 Q. robur
Protein Identifier  ? Qrob_P0589550.2 Organism . Name  Quercus robur
Score  97.2 Score Type  egn
Protein Description  (M=1) 2.1.1.171 - 16S rRNA (guanine(966)-N(2))-methyltransferase. Code Enzyme  EC:2.1.1.171
Gene Prediction Quality  validated Protein length 

Sequence

Length: 237  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008168 methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
GO:0031167 rRNA methylation The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100261175 8 235 + 228 Gaps:7 68.58 331 73.57 4e-107 putative rRNA methyltransferase ylbH-like
blastp_kegg lcl|pop:POPTR_0001s34860g 8 235 + 228 Gaps:8 73.52 321 70.76 7e-102 POPTRDRAFT_829723 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10012231mg 31 235 + 205 Gaps:12 73.21 280 76.59 4e-99 hypothetical protein
blastp_kegg lcl|cit:102611892 31 235 + 205 Gaps:12 64.67 317 76.59 2e-97 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa020691mg 8 235 + 228 Gaps:9 85.13 269 71.18 7e-97 hypothetical protein
blastp_kegg lcl|tcc:TCM_018123 7 235 + 229 Gaps:14 52.93 444 67.23 2e-96 Gb:AAC66597.1
blastp_kegg lcl|mdm:103442309 8 235 + 228 Gaps:2 70.19 322 67.26 2e-96 uncharacterized LOC103442309
blastp_kegg lcl|sot:102582001 36 235 + 200 Gaps:3 58.28 338 76.14 5e-96 uncharacterized LOC102582001
blastp_kegg lcl|pmum:103329946 8 235 + 228 Gaps:9 70.68 324 70.31 2e-95 uncharacterized LOC103329946
blastp_kegg lcl|sly:101262377 1 235 + 235 Gaps:6 69.53 338 67.23 2e-94 putative rRNA methyltransferase YlbH-like
blastp_pdb 1ws6_A 116 231 + 116 Gaps:11 61.40 171 43.81 1e-06 mol:protein length:171 methyltransferase
rpsblast_cdd gnl|CDD|202698 117 232 + 116 Gaps:8 59.02 183 37.04 7e-28 pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
rpsblast_cdd gnl|CDD|31085 117 230 + 114 Gaps:6 57.75 187 35.19 1e-18 COG0742 COG0742 N6-adenine-specific methylase [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|188022 108 233 + 126 Gaps:15 60.53 190 33.04 3e-13 TIGR00095 TIGR00095 RNA methyltransferase RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases including ribosomal RNA adenine dimethylases.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 117 229 113 SSF53335 none none IPR029063
Phobius 1 31 31 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 116 231 116 PTHR18895:SF60 none none none
Phobius 14 31 18 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 116 231 116 PTHR18895 none none none
Pfam 118 224 107 PF03602 none Conserved hypothetical protein 95 IPR004398
Phobius 2 13 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 32 236 205 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 111 232 122 G3DSA:3.40.50.150 none none IPR029063

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 24 23

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting