Protein : Qrob_P0589160.2 Q. robur
Protein Identifier  ? Qrob_P0589160.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K13679 - granule-bound starch synthase [EC:2.4.1.242] Code Enzyme  EC:2.4.1.242
Gene Prediction Quality  validated Protein length 

Sequence

Length: 612  
Kegg Orthology  K13679
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0004373 glycogen (starch) synthase activity Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1).

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015612 1 611 + 611 Gaps:3 100.00 610 80.98 0.0 UDP-Glycosyltransferase superfamily protein isoform 1
blastp_kegg lcl|pxb:103935950 1 611 + 611 Gaps:7 100.00 614 80.94 0.0 granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|mdm:103454831 1 611 + 611 Gaps:7 100.00 614 80.62 0.0 granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|pxb:103950708 1 611 + 611 Gaps:7 100.00 614 80.46 0.0 granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|mdm:103437450 1 611 + 611 Gaps:7 100.00 614 80.13 0.0 GBSSIa granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|pmum:103344039 1 611 + 611 Gaps:6 100.00 613 81.24 0.0 granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|pper:PRUPE_ppa002995mg 1 611 + 611 Gaps:6 100.00 613 81.24 0.0 hypothetical protein
blastp_kegg lcl|cit:102625907 1 611 + 611 Gaps:6 98.23 622 76.27 0.0 granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_kegg lcl|cic:CICLE_v10019349mg 1 611 + 611 Gaps:6 100.00 611 76.10 0.0 hypothetical protein
blastp_kegg lcl|vvi:100264969 1 611 + 611 Gaps:28 100.00 605 79.50 0.0 granule-bound starch synthase 1 chloroplastic/amyloplastic-like
blastp_pdb 3d1j_A 85 586 + 502 Gaps:36 99.79 477 33.19 6e-67 mol:protein length:477 Glycogen synthase
blastp_pdb 3guh_A 85 588 + 504 Gaps:36 98.56 485 33.05 2e-66 mol:protein length:485 Glycogen synthase
blastp_pdb 2r4u_A 85 588 + 504 Gaps:36 98.56 485 33.05 2e-66 mol:protein length:485 Glycogen synthase
blastp_pdb 2r4t_A 85 588 + 504 Gaps:36 98.56 485 33.05 2e-66 mol:protein length:485 Glycogen synthase
blastp_pdb 2qzs_A 85 588 + 504 Gaps:36 98.56 485 33.05 2e-66 mol:protein length:485 glycogen synthase
blastp_pdb 3cx4_A 85 588 + 504 Gaps:36 98.56 485 32.85 2e-65 mol:protein length:485 Glycogen synthase
blastp_pdb 3cop_A 85 588 + 504 Gaps:36 98.56 485 32.85 2e-65 mol:protein length:485 Glycogen synthase
blastp_pdb 1rzv_B 85 576 + 492 Gaps:37 95.88 485 32.90 1e-59 mol:protein length:485 Glycogen synthase 1
blastp_pdb 1rzv_A 85 576 + 492 Gaps:37 95.88 485 32.90 1e-59 mol:protein length:485 Glycogen synthase 1
blastp_pdb 1rzu_B 85 576 + 492 Gaps:37 95.88 485 32.90 1e-59 mol:protein length:485 Glycogen synthase 1
blastp_uniprot_sprot sp|O82627|SSG1_ANTMA 1 611 + 611 Gaps:9 100.00 608 79.77 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Antirrhinum majus GN WAXY PE 2 SV 1
blastp_uniprot_sprot sp|Q43784|SSG1_MANES 1 611 + 611 Gaps:13 100.00 608 78.78 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Manihot esculenta GN WAXY PE 2 SV 1
blastp_uniprot_sprot sp|Q00775|SSG1_SOLTU 1 611 + 611 Gaps:10 100.00 607 77.43 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Solanum tuberosum GN WAXY PE 1 SV 1
blastp_uniprot_sprot sp|Q42857|SSG1_IPOBA 1 611 + 611 Gaps:11 100.00 608 77.96 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Ipomoea batatas GN WAXY PE 2 SV 2
blastp_uniprot_sprot sp|Q9MAQ0|SSG1_ARATH 1 611 + 611 Gaps:5 100.00 610 73.44 0.0 Probable granule-bound starch synthase 1 chloroplastic/amyloplastic OS Arabidopsis thaliana GN WAXY PE 2 SV 1
blastp_uniprot_sprot sp|Q43092|SSG1_PEA 1 611 + 611 Gaps:18 100.00 603 72.14 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Pisum sativum PE 1 SV 1
blastp_uniprot_sprot sp|Q8LL05|SSG1B_HORVU 49 611 + 563 Gaps:1 99.82 565 69.68 0.0 Granule-bound starch synthase 1b chloroplastic/amyloplastic (Fragment) OS Hordeum vulgare PE 1 SV 1
blastp_uniprot_sprot sp|Q0DEV5|SSG1_ORYSJ 1 611 + 611 Gaps:6 100.00 609 64.04 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Oryza sativa subsp. japonica GN WAXY PE 1 SV 1
blastp_uniprot_sprot sp|A2Y8X2|SSG1_ORYSI 1 611 + 611 Gaps:6 100.00 609 64.04 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Oryza sativa subsp. indica GN WAXY PE 3 SV 2
blastp_uniprot_sprot sp|Q42968|SSG1_ORYGL 1 611 + 611 Gaps:6 100.00 609 64.04 0.0 Granule-bound starch synthase 1 chloroplastic/amyloplastic OS Oryza glaberrima GN WAXY PE 1 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 157 372 216 PTHR12526 none none none
PANTHER 397 606 210 PTHR12526 none none none
Hamap 85 586 502 MF_00484 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" Glycogen synthase [glgA]. IPR011835
PANTHER 157 372 216 PTHR12526:SF337 none none none
PANTHER 85 129 45 PTHR12526:SF337 none none none
Pfam 87 347 261 PF08323 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" Starch synthase catalytic domain IPR013534
TIGRFAM 85 583 499 TIGR02095 "KEGG:00500+2.4.1.21","MetaCyc:PWY-622","UniPathway:UPA00164" glgA: glycogen/starch synthase, ADP-glucose type IPR011835
Gene3D 358 568 211 G3DSA:3.40.50.2000 none none none
SUPERFAMILY 82 580 499 SSF53756 none none none
PANTHER 397 606 210 PTHR12526:SF337 none none none
Pfam 402 524 123 PF00534 none Glycosyl transferases group 1 IPR001296
PANTHER 85 129 45 PTHR12526 none none none

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting