Protein : Qrob_P0585640.2 Q. robur
Protein Identifier  ? Qrob_P0585640.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=1) PTHR13710//PTHR13710:SF82 - DNA HELICASE RECQ FAMILY MEMBER // SUBFAMILY NOT NAMED Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 724  
Kegg Orthology  K10901
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO:0006310 DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100242171 1 723 + 723 Gaps:23 100.00 730 75.48 0.0 ATP-dependent DNA helicase Q-like 3-like
blastp_kegg lcl|tcc:TCM_000111 1 723 + 723 Gaps:35 100.00 746 71.45 0.0 DEAD/DEAH box RNA helicase family protein
blastp_kegg lcl|fve:101299411 1 723 + 723 Gaps:32 100.00 733 72.58 0.0 ATP-dependent DNA helicase Q-like 3-like
blastp_kegg lcl|rcu:RCOM_0017330 1 715 + 715 Gaps:22 99.58 718 73.29 0.0 DNA helicase putative
blastp_kegg lcl|pmum:103340604 1 723 + 723 Gaps:23 100.00 728 73.76 0.0 ATP-dependent DNA helicase Q-like 3
blastp_kegg lcl|pper:PRUPE_ppa002026mg 1 723 + 723 Gaps:22 100.00 727 73.73 0.0 hypothetical protein
blastp_kegg lcl|pxb:103929696 1 723 + 723 Gaps:20 100.00 727 73.04 0.0 ATP-dependent DNA helicase Q-like 3
blastp_kegg lcl|cit:102620027 1 723 + 723 Gaps:20 100.00 731 70.86 0.0 ATP-dependent DNA helicase Q-like 3-like
blastp_kegg lcl|cic:CICLE_v10027001mg 1 723 + 723 Gaps:41 100.00 742 69.95 0.0 hypothetical protein
blastp_kegg lcl|gmx:100819601 1 723 + 723 Gaps:36 100.00 737 70.83 0.0 ATP-dependent DNA helicase Q-like 3-like
blastp_pdb 1oyy_A 23 427 + 405 Gaps:38 75.53 523 43.29 6e-92 mol:protein length:523 ATP-dependent DNA helicase
blastp_pdb 1oyw_A 23 427 + 405 Gaps:38 75.53 523 43.29 6e-92 mol:protein length:523 ATP-dependent DNA helicase
blastp_pdb 2wwy_B 23 424 + 402 Gaps:28 68.02 591 41.04 6e-90 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2wwy_A 23 424 + 402 Gaps:28 68.02 591 41.04 6e-90 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2v1x_B 23 424 + 402 Gaps:28 68.02 591 41.04 6e-90 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2v1x_A 23 424 + 402 Gaps:28 68.02 591 41.04 6e-90 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 1s2m_A 41 340 + 300 Gaps:42 76.00 400 24.67 8e-07 mol:protein length:400 Putative ATP-dependent RNA helicase DHH1
blastp_uniprot_sprot sp|Q9FT72|RQL3_ARATH 1 699 + 699 Gaps:38 96.91 713 66.43 0.0 ATP-dependent DNA helicase Q-like 3 OS Arabidopsis thaliana GN RECQL3 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VID5|RECQ5_MOUSE 32 457 + 426 Gaps:29 44.70 982 42.37 1e-103 ATP-dependent DNA helicase Q5 OS Mus musculus GN Recql5 PE 2 SV 1
blastp_uniprot_sprot sp|O94762|RECQ5_HUMAN 32 457 + 426 Gaps:28 44.20 991 42.24 2e-103 ATP-dependent DNA helicase Q5 OS Homo sapiens GN RECQL5 PE 1 SV 2
blastp_uniprot_sprot sp|O18017|BLM_CAEEL 24 425 + 402 Gaps:32 41.50 988 45.37 2e-100 Bloom syndrome protein homolog OS Caenorhabditis elegans GN him-6 PE 2 SV 2
blastp_uniprot_sprot sp|D4ACP5|RECQ5_RAT 32 464 + 433 Gaps:30 45.94 973 42.06 5e-99 ATP-dependent DNA helicase Q5 OS Rattus norvegicus GN Recql5 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FT73|MED34_ARATH 32 424 + 393 Gaps:34 55.46 705 42.97 4e-94 Mediator of RNA polymerase II transcription subunit 34 OS Arabidopsis thaliana GN MED34 PE 1 SV 1
blastp_uniprot_sprot sp|Q09811|HUS2_SCHPO 28 424 + 397 Gaps:27 30.42 1328 41.09 3e-92 ATP-dependent DNA helicase hus2/rqh1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rqh1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AYJ1|RECQ1_RAT 23 424 + 402 Gaps:28 64.73 621 41.54 2e-91 ATP-dependent DNA helicase Q1 OS Rattus norvegicus GN Recql PE 2 SV 1
blastp_uniprot_sprot sp|P35187|SGS1_YEAST 27 426 + 400 Gaps:28 28.20 1447 40.20 5e-91 ATP-dependent helicase SGS1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SGS1 PE 1 SV 1
blastp_uniprot_sprot sp|P54132|BLM_HUMAN 24 424 + 401 Gaps:23 29.08 1417 41.50 7e-91 Bloom syndrome protein OS Homo sapiens GN BLM PE 1 SV 1
rpsblast_cdd gnl|CDD|30860 21 555 + 535 Gaps:37 89.83 590 38.11 1e-117 COG0514 RecQ Superfamily II DNA helicase [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|129701 26 425 + 400 Gaps:35 85.32 470 47.38 1e-115 TIGR00614 recQ_fam ATP-dependent DNA helicase RecQ family. All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination recombinational repair and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University).
rpsblast_cdd gnl|CDD|130456 27 427 + 401 Gaps:27 66.33 591 41.58 1e-109 TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions as well as more distantly related bacterial helicases related to RecQ.

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 21 483 463 PTHR13710 none none none
Gene3D 378 441 64 G3DSA:1.10.10.10 none none IPR011991
ProSiteProfiles 246 385 140 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
PANTHER 21 483 463 PTHR13710:SF82 none none none
Gene3D 224 358 135 G3DSA:3.40.50.300 none none IPR027417
TIGRFAM 27 428 402 TIGR00614 none recQ_fam: ATP-dependent DNA helicase, RecQ family IPR004589
SUPERFAMILY 76 362 287 SSF52540 none none IPR027417
Pfam 283 341 59 PF00271 none Helicase conserved C-terminal domain IPR001650
Coils 553 574 22 Coil none none none
SMART 33 235 203 SM00487 none DEAD-like helicases superfamily IPR014001
Gene3D 21 223 203 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 45 219 175 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Pfam 41 205 165 PF00270 none DEAD/DEAH box helicase IPR011545
SMART 270 342 73 SM00490 none helicase superfamily c-terminal domain IPR001650

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting