Protein : Qrob_P0585630.2 Q. robur
Protein Identifier  ? Qrob_P0585630.2 Organism . Name  Quercus robur
Score  93.0 Score Type  egn
Protein Description  (M=1) 5.3.1.23 - S-methyl-5-thioribose-1-phosphate isomerase. Code Enzyme  EC:5.3.1.23
Gene Prediction Quality  validated Protein length 

Sequence

Length: 408  
Kegg Orthology  K08963
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0044237 cellular metabolic process The chemical reactions and pathways by which individual cells transform chemical substances.
GO:0044249 cellular biosynthetic process The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0006s23650g 6 400 + 395 Gaps:35 96.00 375 81.94 0.0 POPTRDRAFT_832064 eukaryotic translation initiation factor 2B family protein
blastp_kegg lcl|cit:102610062 4 403 + 400 Gaps:37 97.86 373 82.74 0.0 methylthioribose-1-phosphate isomerase-like
blastp_kegg lcl|cic:CICLE_v10008682mg 4 403 + 400 Gaps:37 97.86 373 83.29 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_037508 6 400 + 395 Gaps:36 84.67 424 83.29 0.0 NagB/RpiA/CoA transferase-like superfamily protein isoform 1
blastp_kegg lcl|pmum:103340605 5 405 + 401 Gaps:35 95.81 382 77.87 0.0 methylthioribose-1-phosphate isomerase
blastp_kegg lcl|pper:PRUPE_ppa007089mg 5 403 + 399 Gaps:35 95.29 382 78.30 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0711420 1 407 + 407 Gaps:44 99.74 382 77.43 0.0 Methylthioribose-1-phosphate isomerase putative (EC:5.3.1.23)
blastp_kegg lcl|sot:102596204 7 406 + 400 Gaps:35 97.59 374 78.36 0.0 methylthioribose-1-phosphate isomerase-like
blastp_kegg lcl|pxb:103929697 6 403 + 398 Gaps:35 96.03 378 77.69 0.0 methylthioribose-1-phosphate isomerase-like
blastp_kegg lcl|mdm:103451249 6 403 + 398 Gaps:35 95.03 382 77.96 0.0 methylthioribose-1-phosphate isomerase-like
blastp_pdb 2a0u_B 7 378 + 372 Gaps:40 90.86 383 50.29 6e-99 mol:protein length:383 initiation factor 2B
blastp_pdb 2a0u_A 7 378 + 372 Gaps:40 90.86 383 50.29 6e-99 mol:protein length:383 initiation factor 2B
blastp_pdb 1t9k_D 9 379 + 371 Gaps:47 93.37 347 50.31 9e-86 mol:protein length:347 Probable methylthioribose-1-phosphate isomera
blastp_pdb 1t9k_C 9 379 + 371 Gaps:47 93.37 347 50.31 9e-86 mol:protein length:347 Probable methylthioribose-1-phosphate isomera
blastp_pdb 1t9k_B 9 379 + 371 Gaps:47 93.37 347 50.31 9e-86 mol:protein length:347 Probable methylthioribose-1-phosphate isomera
blastp_pdb 1t9k_A 9 379 + 371 Gaps:47 93.37 347 50.31 9e-86 mol:protein length:347 Probable methylthioribose-1-phosphate isomera
blastp_pdb 2yvk_D 9 380 + 372 Gaps:50 87.70 374 46.65 3e-71 mol:protein length:374 Methylthioribose-1-phosphate isomerase
blastp_pdb 2yvk_C 9 380 + 372 Gaps:50 87.70 374 46.65 3e-71 mol:protein length:374 Methylthioribose-1-phosphate isomerase
blastp_pdb 2yvk_B 9 380 + 372 Gaps:50 87.70 374 46.65 3e-71 mol:protein length:374 Methylthioribose-1-phosphate isomerase
blastp_pdb 2yvk_A 9 380 + 372 Gaps:50 87.70 374 46.65 3e-71 mol:protein length:374 Methylthioribose-1-phosphate isomerase
blastp_uniprot_sprot sp|B9HCR2|MTNA_POPTR 6 400 + 395 Gaps:35 96.00 375 81.94 0.0 Methylthioribose-1-phosphate isomerase OS Populus trichocarpa GN POPTRDRAFT_832064 PE 3 SV 2
blastp_uniprot_sprot sp|Q948X8|MTNA_TOBAC 7 406 + 400 Gaps:35 97.59 374 79.45 0.0 Methylthioribose-1-phosphate isomerase OS Nicotiana tabacum GN CIG2 PE 2 SV 1
blastp_uniprot_sprot sp|B9RR88|MTNA_RICCO 1 407 + 407 Gaps:44 99.74 382 77.43 0.0 Methylthioribose-1-phosphate isomerase OS Ricinus communis GN RCOM_0711420 PE 2 SV 1
blastp_uniprot_sprot sp|D7TCD0|MTNA_VITVI 3 401 + 399 Gaps:36 96.54 376 80.99 0.0 Methylthioribose-1-phosphate isomerase OS Vitis vinifera GN VIT_11s0016g00830 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZUG4|MTNA_ARATH 7 402 + 396 Gaps:35 96.52 374 76.73 0.0 Methylthioribose-1-phosphate isomerase OS Arabidopsis thaliana GN At2g05830 PE 2 SV 2
blastp_uniprot_sprot sp|B6TZD1|MTNA_MAIZE 5 399 + 395 Gaps:37 98.09 367 75.00 1e-177 Methylthioribose-1-phosphate isomerase OS Zea mays GN IDI2 PE 2 SV 1
blastp_uniprot_sprot sp|A2ZCP0|MTNA_ORYSI 7 401 + 395 Gaps:36 96.52 374 73.13 4e-173 Methylthioribose-1-phosphate isomerase OS Oryza sativa subsp. indica GN OsI_35550 PE 2 SV 1
blastp_uniprot_sprot sp|Q0ITU1|MTNA_ORYSJ 7 401 + 395 Gaps:36 96.52 374 73.13 6e-173 Methylthioribose-1-phosphate isomerase OS Oryza sativa subsp. japonica GN IDI2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9AYT7|MTNA_HORVU 5 400 + 396 Gaps:37 98.37 367 73.41 1e-172 Methylthioribose-1-phosphate isomerase OS Hordeum vulgare GN IDI2 PE 2 SV 1
blastp_uniprot_sprot sp|B6QRG1|MTNA_PENMQ 7 398 + 392 Gaps:59 96.61 384 56.60 2e-127 Methylthioribose-1-phosphate isomerase OS Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN mri1 PE 3 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 287 376 90 PF01008 "KEGG:00270+5.3.1.23","MetaCyc:PWY-4361","MetaCyc:PWY-7174","UniPathway:UPA00904" Initiation factor 2 subunit family IPR000649
Pfam 50 261 212 PF01008 "KEGG:00270+5.3.1.23","MetaCyc:PWY-4361","MetaCyc:PWY-7174","UniPathway:UPA00904" Initiation factor 2 subunit family IPR000649
Gene3D 8 171 164 G3DSA:1.20.120.420 "KEGG:00270+5.3.1.23","MetaCyc:PWY-4361","MetaCyc:PWY-7174","UniPathway:UPA00904" none IPR027363
SUPERFAMILY 286 376 91 SSF100950 none none none
PANTHER 1 257 257 PTHR10233:SF6 none none none
PANTHER 287 394 108 PTHR10233:SF6 none none none
TIGRFAM 35 264 230 TIGR00524 "KEGG:00270+5.3.1.23","MetaCyc:PWY-4361","MetaCyc:PWY-7174","UniPathway:UPA00904" eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins IPR011559
SUPERFAMILY 4 261 258 SSF100950 none none none
Gene3D 287 383 97 G3DSA:3.40.50.10470 none none none
TIGRFAM 9 262 254 TIGR00512 "KEGG:00270+5.3.1.23","MetaCyc:PWY-4361","MetaCyc:PWY-7174","UniPathway:UPA00904" salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase IPR005251
PANTHER 287 394 108 PTHR10233 none none none
Hamap 7 399 393 MF_01678 "KEGG:00270+5.3.1.23","MetaCyc:PWY-4361","MetaCyc:PWY-7174","UniPathway:UPA00904" Putative methylthioribose-1-phosphate isomerase [mtnA]. IPR005251
Gene3D 172 261 90 G3DSA:3.40.50.10470 none none none
PANTHER 1 257 257 PTHR10233 none none none

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting