Protein : Qrob_P0585500.2 Q. robur
Protein Identifier  ? Qrob_P0585500.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K08908 - light-harvesting complex I chlorophyll a/b binding protein 2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 265  
Kegg Orthology  K08908
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0009765 photosynthesis, light harvesting Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa010035mg 4 250 + 247 none 92.51 267 83.81 4e-152 hypothetical protein
blastp_kegg lcl|pmum:103340611 4 250 + 247 none 92.51 267 83.00 5e-148 chlorophyll a-b binding protein chloroplastic
blastp_kegg lcl|sly:101252151 3 257 + 255 Gaps:4 96.54 260 82.07 2e-145 chlorophyll a-b binding protein chloroplastic-like
blastp_kegg lcl|gmx:100812066 8 250 + 243 none 93.46 260 82.30 7e-145 chlorophyll a-b binding protein chloroplastic-like
blastp_kegg lcl|pxb:103929687 8 250 + 243 Gaps:4 92.86 266 84.21 3e-144 chlorophyll a-b binding protein chloroplastic
blastp_kegg lcl|mdm:103451376 8 250 + 243 Gaps:4 92.51 267 83.81 1e-143 chlorophyll a-b binding protein chloroplastic
blastp_kegg lcl|gmx:100800374 8 250 + 243 none 93.46 260 81.48 1e-143 chlorophyll a-b binding protein chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10009205mg 4 251 + 248 none 93.58 265 79.03 2e-143 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_009G225500g 8 250 + 243 Gaps:1 93.49 261 81.56 4e-143 hypothetical protein
blastp_kegg lcl|tcc:TCM_037497 9 250 + 242 Gaps:2 92.66 259 82.92 8e-143 Photosystem I light harvesting complex gene 6 isoform 1
blastp_pdb 2wsf_2 29 251 + 223 Gaps:2 82.90 269 64.13 2e-101 mol:protein length:269 TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM
blastp_pdb 2wse_2 29 251 + 223 Gaps:2 82.90 269 64.13 2e-101 mol:protein length:269 TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM
blastp_pdb 2wsc_2 29 251 + 223 Gaps:2 82.90 269 64.13 2e-101 mol:protein length:269 TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM
blastp_pdb 2o01_2 59 244 + 186 none 100.00 186 68.28 2e-91 mol:protein length:186 Type II chlorophyll a/b binding protein from
blastp_pdb 3lw5_2 79 251 + 173 none 98.30 176 63.58 4e-79 mol:protein length:176 Type II chlorophyll a/b binding protein from
blastp_pdb 2wsf_4 52 251 + 200 Gaps:7 76.89 251 51.81 8e-61 mol:protein length:251 CHLOROPHYLL A-B BINDING PROTEIN P4 CHLOROPLA
blastp_pdb 2wse_4 52 251 + 200 Gaps:7 76.89 251 51.81 8e-61 mol:protein length:251 CHLOROPHYLL A-B BINDING PROTEIN P4 CHLOROPLA
blastp_pdb 2wsc_4 52 251 + 200 Gaps:7 76.89 251 51.81 8e-61 mol:protein length:251 CHLOROPHYLL A-B BINDING PROTEIN P4 CHLOROPLA
blastp_pdb 2o01_4 81 251 + 171 Gaps:6 100.00 165 49.70 2e-49 mol:protein length:165 PSI light-harvesting antenna chlorophyll a/b-
blastp_pdb 3lw5_4 77 247 + 171 Gaps:7 98.80 166 50.61 3e-48 mol:protein length:166 Chlorophyll a-b binding protein P4 chloropla
blastp_uniprot_sprot sp|P13869|CB12_PETHY 13 251 + 239 Gaps:9 85.19 270 66.52 6e-107 Chlorophyll a-b binding protein chloroplastic OS Petunia hybrida PE 2 SV 1
blastp_uniprot_sprot sp|P10708|CB12_SOLLC 24 251 + 228 Gaps:5 86.30 270 63.95 5e-105 Chlorophyll a-b binding protein 7 chloroplastic OS Solanum lycopersicum GN CAB7 PE 3 SV 1
blastp_uniprot_sprot sp|P27521|CA4_ARATH 19 247 + 229 Gaps:9 90.04 251 48.23 2e-64 Chlorophyll a-b binding protein 4 chloroplastic OS Arabidopsis thaliana GN LHCA4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SQL2|CB24_PEA 52 251 + 200 Gaps:6 76.98 252 52.06 1e-62 Chlorophyll a-b binding protein P4 chloroplastic OS Pisum sativum GN lhcA-P4 PE 1 SV 1
blastp_uniprot_sprot sp|Q32904|CB23_PEA 48 253 + 206 Gaps:27 80.36 275 42.53 3e-48 Chlorophyll a-b binding protein 3 chloroplastic OS Pisum sativum GN lhca3 PE 1 SV 1
blastp_uniprot_sprot sp|Q36718|CB120_HORVU 52 251 + 200 Gaps:9 83.55 231 45.08 9e-47 Chlorophyll a-b binding protein 1B-20 chloroplastic (Fragment) OS Hordeum vulgare GN LHC Ib-20 PE 1 SV 1
blastp_uniprot_sprot sp|P27522|CB13_SOLLC 48 253 + 206 Gaps:19 80.95 273 42.53 2e-46 Chlorophyll a-b binding protein 8 chloroplastic OS Solanum lycopersicum GN CAB8 PE 3 SV 1
blastp_uniprot_sprot sp|Q01667|CAB6_ARATH 52 255 + 204 Gaps:28 80.50 241 44.85 3e-39 Chlorophyll a-b binding protein 6 chloroplastic OS Arabidopsis thaliana GN LHCA1 PE 1 SV 1
blastp_uniprot_sprot sp|P27524|CB4A_SOLLC 19 235 + 217 Gaps:41 82.81 256 42.92 4e-37 Chlorophyll a-b binding protein CP24 10A chloroplastic OS Solanum lycopersicum GN CAP10A PE 3 SV 1
blastp_uniprot_sprot sp|Q9SDM1|CB121_HORVU 52 252 + 201 Gaps:28 77.96 245 43.98 2e-36 Chlorophyll a-b binding protein 1B-21 chloroplastic OS Hordeum vulgare GN LHC Ib-21 PE 1 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 5 249 245 PTHR21649:SF5 none none none
Phobius 229 264 36 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 5 249 245 PTHR21649 none none IPR001344
Phobius 212 228 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 49 249 201 G3DSA:1.10.3460.10 none none IPR023329
Phobius 1 211 211 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 48 252 205 SSF103511 none none IPR023329
Pfam 58 224 167 PF00504 none Chlorophyll A-B binding protein IPR022796

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting