Protein : Qrob_P0583740.2 Q. robur
Protein Identifier  ? Qrob_P0583740.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) 6.1.1.16 - Cysteine--tRNA ligase. Code Enzyme  EC:6.1.1.16
Gene Prediction Quality  validated Protein length 

Sequence

Length: 548  
Kegg Orthology  K01883
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004817 cysteine-tRNA ligase activity Catalysis of the reaction: ATP + L-cysteine + tRNA(Cys) = AMP + diphosphate + L-cysteinyl-tRNA(Cys).
GO:0006423 cysteinyl-tRNA aminoacylation The process of coupling cysteine to cysteinyl-tRNA, catalyzed by cysteinyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa003593mg 3 547 + 545 Gaps:25 99.82 563 77.58 0.0 hypothetical protein
blastp_kegg lcl|mdm:103456226 3 547 + 545 Gaps:19 99.82 563 75.98 0.0 cysteine--tRNA ligase cytoplasmic
blastp_kegg lcl|tcc:TCM_019993 4 547 + 544 Gaps:34 99.65 576 74.74 0.0 Cysteinyl-tRNA synthetase class Ia family protein ARATH isoform 1
blastp_kegg lcl|pxb:103946728 4 547 + 544 Gaps:17 99.64 563 75.58 0.0 cysteine--tRNA ligase cytoplasmic
blastp_kegg lcl|pop:POPTR_0018s02040g 46 547 + 502 none 87.76 572 81.47 0.0 POPTRDRAFT_809135 hypothetical protein
blastp_kegg lcl|cmo:103503847 46 547 + 502 none 87.15 576 81.27 0.0 cysteine--tRNA ligase cytoplasmic
blastp_kegg lcl|vvi:100245851 33 547 + 515 Gaps:14 91.94 571 79.05 0.0 cysteinyl-tRNA synthetase-like
blastp_kegg lcl|csv:101210985 46 547 + 502 none 87.15 576 80.68 0.0 cysteine--tRNA ligase-like
blastp_kegg lcl|rcu:RCOM_0923140 13 547 + 535 Gaps:23 95.56 563 78.07 0.0 cysteinyl-tRNA synthetase putative (EC:6.1.1.16)
blastp_kegg lcl|fve:101304247 4 547 + 544 Gaps:5 99.46 552 75.77 0.0 cysteine--tRNA ligase-like
blastp_pdb 1u0b_B 49 532 + 484 Gaps:28 99.35 461 46.29 1e-132 mol:protein length:461 cysteinyl tRNA
blastp_pdb 1li7_B 49 532 + 484 Gaps:28 99.35 461 46.29 1e-132 mol:protein length:461 CYSTEINYL-TRNA SYNTHETASE
blastp_pdb 1li7_A 49 532 + 484 Gaps:28 99.35 461 46.29 1e-132 mol:protein length:461 CYSTEINYL-TRNA SYNTHETASE
blastp_pdb 1li5_B 49 532 + 484 Gaps:28 99.35 461 46.29 1e-132 mol:protein length:461 CYSTEINYL-TRNA SYNTHETASE
blastp_pdb 1li5_A 49 532 + 484 Gaps:28 99.35 461 46.29 1e-132 mol:protein length:461 CYSTEINYL-TRNA SYNTHETASE
blastp_pdb 3tqo_A 51 532 + 482 Gaps:30 98.27 462 44.93 9e-132 mol:protein length:462 Cysteinyl-tRNA synthetase
blastp_pdb 3c8z_B 37 420 + 384 Gaps:31 90.58 414 36.80 1e-66 mol:protein length:414 Cysteinyl-tRNA synthetase
blastp_pdb 3c8z_A 37 420 + 384 Gaps:31 90.58 414 36.80 1e-66 mol:protein length:414 Cysteinyl-tRNA synthetase
blastp_pdb 3sp1_B 49 529 + 481 Gaps:62 94.41 501 34.67 2e-63 mol:protein length:501 Cysteinyl-tRNA synthetase
blastp_pdb 3sp1_A 49 529 + 481 Gaps:62 94.41 501 34.67 2e-63 mol:protein length:501 Cysteinyl-tRNA synthetase
blastp_uniprot_sprot sp|B3E1P0|SYC_GEOLS 49 532 + 484 Gaps:1 99.18 487 49.48 3e-167 Cysteine--tRNA ligase OS Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN cysS PE 3 SV 1
blastp_uniprot_sprot sp|Q39ZL8|SYC_GEOMG 49 532 + 484 Gaps:3 99.18 485 48.86 4e-162 Cysteine--tRNA ligase OS Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN cysS PE 3 SV 1
blastp_uniprot_sprot sp|A1AK01|SYC_PELPD 49 531 + 483 Gaps:7 98.99 493 48.16 7e-161 Cysteine--tRNA ligase OS Pelobacter propionicus (strain DSM 2379) GN cysS PE 3 SV 1
blastp_uniprot_sprot sp|Q6AJ23|SYC_DESPS 51 531 + 481 Gaps:2 97.96 489 45.93 1e-158 Cysteine--tRNA ligase OS Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN cysS PE 3 SV 1
blastp_uniprot_sprot sp|B9LZV4|SYC_GEODF 49 531 + 483 Gaps:10 98.99 494 48.26 1e-157 Cysteine--tRNA ligase OS Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) GN cysS PE 3 SV 1
blastp_uniprot_sprot sp|Q3A8C9|SYC_PELCD 49 532 + 484 Gaps:9 99.17 481 46.96 4e-156 Cysteine--tRNA ligase OS Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN cysS PE 3 SV 1
blastp_uniprot_sprot sp|Q747A2|SYC_GEOSL 49 532 + 484 Gaps:9 99.17 481 47.80 4e-156 Cysteine--tRNA ligase OS Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN cysS PE 3 SV 1
blastp_uniprot_sprot sp|Q3J8Y9|SYC_NITOC 49 532 + 484 Gaps:20 99.38 485 47.30 7e-155 Cysteine--tRNA ligase OS Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN cysS PE 3 SV 1
blastp_uniprot_sprot sp|A5G949|SYC_GEOUR 49 531 + 483 Gaps:10 98.99 494 47.03 3e-154 Cysteine--tRNA ligase OS Geobacter uraniireducens (strain Rf4) GN cysS PE 3 SV 1
blastp_uniprot_sprot sp|C6E7P0|SYC_GEOSM 49 532 + 484 Gaps:14 99.17 480 46.64 7e-152 Cysteine--tRNA ligase OS Geobacter sp. (strain M21) GN cysS PE 3 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 354 461 108 G3DSA:1.20.120.640 none none none
PRINTS 268 289 22 PR00983 "KEGG:00970+6.1.1.16" Cysteinyl-tRNA synthetase signature IPR024909
PRINTS 108 117 10 PR00983 "KEGG:00970+6.1.1.16" Cysteinyl-tRNA synthetase signature IPR024909
PRINTS 237 255 19 PR00983 "KEGG:00970+6.1.1.16" Cysteinyl-tRNA synthetase signature IPR024909
PRINTS 72 83 12 PR00983 "KEGG:00970+6.1.1.16" Cysteinyl-tRNA synthetase signature IPR024909
SUPERFAMILY 390 532 143 SSF47323 "Reactome:REACT_71" none IPR009080
Pfam 403 466 64 PF09190 "KEGG:00970+6.1.1.16" DALR domain IPR015273
TIGRFAM 49 532 484 TIGR00435 "KEGG:00970+6.1.1.16","Reactome:REACT_71" cysS: cysteine--tRNA ligase IPR015803
PANTHER 8 542 535 PTHR10890:SF7 none none none
Gene3D 67 351 285 G3DSA:3.40.50.620 none none IPR014729
PANTHER 8 542 535 PTHR10890 "KEGG:00970+6.1.1.16";signature_desc=CYSTEINYL-TRNA SYNTHETASE none IPR024909
Hamap 49 534 486 MF_00041 "KEGG:00970+6.1.1.16","Reactome:REACT_71" Cysteine--tRNA ligase [cysS]. IPR015803
SUPERFAMILY 51 358 308 SSF52374 none none none
Pfam 62 358 297 PF01406 "KEGG:00970+6.1.1.16" tRNA synthetases class I (C) catalytic domain IPR024909

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting