Protein : Qrob_P0578450.2 Q. robur
Protein Identifier  ? Qrob_P0578450.2 Organism . Name  Quercus robur
Score  90.3 Score Type  egn
Protein Description  (M=3) PTHR10809:SF43 - VESICLE-ASSOCIATED PROTEIN 1-3 (PTHR10809:SF43) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 181  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005789 endoplasmic reticulum membrane The lipid bilayer surrounding the endoplasmic reticulum.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101302783 1 177 + 177 Gaps:3 74.26 237 82.95 2e-96 vesicle-associated protein 1-3-like
blastp_kegg lcl|pmum:103331723 1 177 + 177 Gaps:2 74.37 238 81.92 6e-96 vesicle-associated protein 1-3
blastp_kegg lcl|pper:PRUPE_ppa010720mg 1 177 + 177 Gaps:2 74.37 238 81.92 6e-96 hypothetical protein
blastp_kegg lcl|pxb:103964548 1 177 + 177 Gaps:2 74.37 238 79.66 4e-93 vesicle-associated protein 1-3
blastp_kegg lcl|pda:103710712 1 180 + 180 Gaps:2 75.00 240 78.33 2e-92 vesicle-associated protein 1-3
blastp_kegg lcl|mdm:103418397 1 180 + 180 Gaps:2 75.63 238 78.33 2e-92 vesicle-associated protein 1-3-like
blastp_kegg lcl|pop:POPTR_0002s14560g 1 177 + 177 Gaps:1 75.11 237 76.40 3e-91 POPTRDRAFT_816557 hypothetical protein
blastp_kegg lcl|mdm:103409261 1 177 + 177 Gaps:2 74.37 238 77.97 4e-91 vesicle-associated protein 1-3-like
blastp_kegg lcl|pxb:103930412 1 180 + 180 Gaps:2 75.63 238 77.22 4e-91 vesicle-associated protein 1-3-like
blastp_kegg lcl|pxb:103961248 1 180 + 180 Gaps:2 75.63 238 76.11 2e-89 vesicle-associated protein 1-3-like
blastp_pdb 3ikk_B 6 95 + 90 Gaps:2 70.87 127 41.11 6e-14 mol:protein length:127 Vesicle-associated membrane protein-associate
blastp_pdb 3ikk_A 6 95 + 90 Gaps:2 70.87 127 41.11 6e-14 mol:protein length:127 Vesicle-associated membrane protein-associate
blastp_pdb 2rr3_A 11 95 + 85 Gaps:1 64.62 130 39.29 1e-13 mol:protein length:130 Vesicle-associated membrane protein-associate
blastp_pdb 1z9o_F 11 99 + 89 Gaps:1 68.75 128 37.50 5e-13 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 1z9o_E 11 99 + 89 Gaps:1 68.75 128 37.50 5e-13 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 1z9o_D 11 99 + 89 Gaps:1 68.75 128 37.50 5e-13 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 1z9o_C 11 99 + 89 Gaps:1 68.75 128 37.50 5e-13 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 1z9o_B 11 99 + 89 Gaps:1 68.75 128 37.50 5e-13 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 1z9o_A 11 99 + 89 Gaps:1 68.75 128 37.50 5e-13 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_pdb 1z9l_A 11 99 + 89 Gaps:1 68.75 128 37.50 5e-13 mol:protein length:128 Vesicle-associated membrane protein-associate
blastp_uniprot_sprot sp|Q84WW5|VAP13_ARATH 1 177 + 177 Gaps:3 74.48 239 70.22 4e-81 Vesicle-associated protein 1-3 OS Arabidopsis thaliana GN PVA13 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VZ95|VAP11_ARATH 1 161 + 161 Gaps:2 62.89 256 64.60 3e-64 Vesicle-associated protein 1-1 OS Arabidopsis thaliana GN PVA11 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SHC8|VAP12_ARATH 5 165 + 161 Gaps:4 66.53 239 66.67 1e-59 Vesicle-associated protein 1-2 OS Arabidopsis thaliana GN PVA12 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SYC9|VAP14_ARATH 1 170 + 170 Gaps:4 54.82 571 55.91 2e-50 Vesicle-associated protein 1-4 OS Arabidopsis thaliana GN PVA14 PE 2 SV 1
blastp_uniprot_sprot sp|O82213|VAP31_ARATH 1 126 + 126 none 84.56 149 61.11 2e-47 Vesicle-associated protein 3-1 OS Arabidopsis thaliana GN PVA31 PE 3 SV 1
blastp_uniprot_sprot sp|B9DHD7|VAP22_ARATH 6 160 + 155 Gaps:4 39.12 386 54.97 1e-44 Vesicle-associated protein 2-2 OS Arabidopsis thaliana GN PVA22 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LVU1|VAP21_ARATH 6 126 + 121 none 55.00 220 58.68 3e-42 Vesicle-associated protein 2-1 OS Arabidopsis thaliana GN PVA21 PE 2 SV 1
blastp_uniprot_sprot sp|O60119|YH75_SCHPO 13 143 + 131 Gaps:4 35.25 383 37.78 2e-15 Vesicle-associated membrane protein-associated protein C16G5.05c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC16G5.05c PE 1 SV 1
blastp_uniprot_sprot sp|P40075|SCS2_YEAST 7 103 + 97 Gaps:1 40.16 244 40.82 1e-14 Vesicle-associated membrane protein-associated protein SCS2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SCS2 PE 1 SV 3
blastp_uniprot_sprot sp|Q9Z269|VAPB_RAT 6 95 + 90 Gaps:2 37.04 243 42.22 4e-13 Vesicle-associated membrane protein-associated protein B OS Rattus norvegicus GN Vapb PE 1 SV 3

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 176 176 PTHR10809:SF43 none none none
PANTHER 1 176 176 PTHR10809 "Reactome:REACT_22258";signature_desc=VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN none IPR016763
Pfam 7 110 104 PF00635 none MSP (Major sperm protein) domain IPR000535
Gene3D 6 125 120 G3DSA:2.60.40.360 none none IPR008962
PIRSF 1 177 177 PIRSF019693 "Reactome:REACT_22258" none IPR016763
SUPERFAMILY 6 137 132 SSF49354 none none IPR008962
ProSiteProfiles 6 126 121 PS50202 none Major sperm protein (MSP) domain profile. IPR000535

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting