Protein : Qrob_P0568450.2 Q. robur
Protein Identifier  ? Qrob_P0568450.2 Organism . Name  Quercus robur
Score  57.1 Score Type  egn
Protein Description  (M=6) K12818 - ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 723  
Kegg Orthology  K12818
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10030826mg 1 722 + 722 Gaps:5 100.00 717 82.15 0.0 hypothetical protein
blastp_kegg lcl|cit:102615247 1 722 + 722 Gaps:5 100.00 717 82.01 0.0 ATP-dependent RNA helicase DHX8-like
blastp_kegg lcl|pvu:PHAVU_003G041900g 23 722 + 700 Gaps:4 98.87 706 82.09 0.0 hypothetical protein
blastp_kegg lcl|gmx:100815345 1 722 + 722 Gaps:17 100.00 705 81.99 0.0 DHX8 DEAH (Asp-Glu-Ala-His) box polypeptide 8
blastp_kegg lcl|vvi:100262984 34 722 + 689 none 96.63 713 82.58 0.0 putative ATP-dependent RNA helicase DHX33-like
blastp_kegg lcl|cam:101507890 34 722 + 689 Gaps:3 96.64 714 82.03 0.0 ATP-dependent RNA helicase DHX8-like
blastp_kegg lcl|gmx:100782527 35 722 + 688 Gaps:5 97.45 705 83.41 0.0 ATP-dependent RNA helicase DHX8-like
blastp_kegg lcl|fve:101307880 4 722 + 719 Gaps:9 100.00 714 78.43 0.0 ATP-dependent RNA helicase DHX8-like
blastp_kegg lcl|pper:PRUPE_ppa002115mg 3 722 + 720 Gaps:7 99.86 714 78.40 0.0 hypothetical protein
blastp_kegg lcl|pmum:103342049 3 722 + 720 Gaps:7 99.86 714 78.26 0.0 putative ATP-dependent RNA helicase DHX33
blastp_pdb 3kx2_A 27 722 + 696 Gaps:73 86.44 767 45.70 0.0 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 3kx2_B 27 722 + 696 Gaps:73 86.44 767 45.70 0.0 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 2xau_B 27 722 + 696 Gaps:73 85.77 773 45.70 0.0 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 2xau_A 27 722 + 696 Gaps:73 85.77 773 45.70 0.0 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 3i4u_A 475 718 + 244 Gaps:15 84.81 270 43.67 1e-56 mol:protein length:270 ATP-dependent RNA helicase DHX8
blastp_pdb 3llm_B 37 260 + 224 Gaps:49 78.72 235 40.54 2e-28 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3llm_A 37 260 + 224 Gaps:49 78.72 235 40.54 2e-28 mol:protein length:235 ATP-dependent RNA helicase A
blastp_uniprot_sprot sp|Q9H6R0|DHX33_HUMAN 42 718 + 677 Gaps:58 88.97 707 49.28 0.0 Putative ATP-dependent RNA helicase DHX33 OS Homo sapiens GN DHX33 PE 1 SV 2
blastp_uniprot_sprot sp|Q80VY9|DHX33_MOUSE 24 718 + 695 Gaps:58 92.41 698 48.22 0.0 Putative ATP-dependent RNA helicase DHX33 OS Mus musculus GN Dhx33 PE 1 SV 1
blastp_uniprot_sprot sp|Q14562|DHX8_HUMAN 39 718 + 680 Gaps:58 51.15 1220 51.44 0.0 ATP-dependent RNA helicase DHX8 OS Homo sapiens GN DHX8 PE 1 SV 1
blastp_uniprot_sprot sp|A2A4P0|DHX8_MOUSE 39 718 + 680 Gaps:58 50.16 1244 51.44 0.0 ATP-dependent RNA helicase DHX8 OS Mus musculus GN Dhx8 PE 2 SV 1
blastp_uniprot_sprot sp|Q54F05|DHX8_DICDI 39 718 + 680 Gaps:58 53.79 1160 51.60 0.0 ATP-dependent RNA helicase dhx8 OS Dictyostelium discoideum GN dhx8 PE 3 SV 1
blastp_uniprot_sprot sp|Q09530|MOG5_CAEEL 39 718 + 680 Gaps:58 52.00 1200 50.96 0.0 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS Caenorhabditis elegans GN mog-5 PE 1 SV 1
blastp_uniprot_sprot sp|Q38953|DHX8_ARATH 28 718 + 691 Gaps:60 54.54 1168 50.39 0.0 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS Arabidopsis thaliana GN At3g26560 PE 1 SV 2
blastp_uniprot_sprot sp|O42643|PRP22_SCHPO 39 722 + 684 Gaps:58 53.94 1168 50.16 0.0 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp22 PE 1 SV 1
blastp_uniprot_sprot sp|Q54MH3|DHX16_DICDI 36 718 + 683 Gaps:59 56.78 1106 50.00 0.0 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Dictyostelium discoideum GN dhx16 PE 3 SV 1
blastp_uniprot_sprot sp|Q03319|PRH1_SCHPO 34 717 + 684 Gaps:56 87.62 719 48.89 0.0 Probable ATP-dependent RNA helicase prh1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prh1 PE 3 SV 2
rpsblast_cdd gnl|CDD|31829 10 715 + 706 Gaps:99 82.25 845 41.01 1e-173 COG1643 HrpA HrpA-like helicases [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162629 45 715 + 671 Gaps:68 48.25 1283 39.58 1e-126 TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long while its paralog HrpB also uncharacterized is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
rpsblast_cdd gnl|CDD|182986 45 714 + 670 Gaps:85 47.99 1294 38.00 1e-117 PRK11131 PRK11131 ATP-dependent RNA helicase HrpA Provisional.

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 44 270 227 SM00487 none DEAD-like helicases superfamily IPR014001
Pfam 478 568 91 PF04408 none Helicase associated domain (HA2) IPR007502
SMART 310 418 109 SM00490 none helicase superfamily c-terminal domain IPR001650
Pfam 330 418 89 PF00271 none Helicase conserved C-terminal domain IPR001650
Pfam 613 717 105 PF07717 none Oligonucleotide/oligosaccharide-binding (OB)-fold IPR011709
ProSiteProfiles 284 458 175 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
Gene3D 283 436 154 G3DSA:3.40.50.300 none none IPR027417
SMART 61 298 238 SM00382 none ATPases associated with a variety of cellular activities IPR003593
SMART 478 569 92 SM00847 none Helicase associated domain (HA2) Add an annotation IPR007502
Gene3D 232 245 14 G3DSA:3.40.50.300 none none IPR027417
Gene3D 45 190 146 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 40 186 147 SSF52540 none none IPR027417
SUPERFAMILY 230 608 379 SSF52540 none none IPR027417
PANTHER 32 191 160 PTHR18934 none none none
PANTHER 233 718 486 PTHR18934 none none none
ProSiteProfiles 56 261 206 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
ProSitePatterns 162 171 10 PS00690 none DEAH-box subfamily ATP-dependent helicases signature. IPR002464

0 Localization

0 Qtllist

0 Targeting