3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
| GO:0000272 | polysaccharide catabolic process | The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. |
| GO:0016161 | beta-amylase activity | Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains. |
37 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pop:POPTR_0003s03330g | 1 | 546 | + | 546 | Gaps:9 | 100.00 | 547 | 79.16 | 0.0 | beta-amylase family protein |
| blastp_kegg | lcl|pop:POPTR_0003s08360g | 1 | 546 | + | 546 | Gaps:8 | 100.00 | 548 | 78.83 | 0.0 | beta-amylase family protein |
| blastp_kegg | lcl|tcc:TCM_015812 | 1 | 546 | + | 546 | Gaps:13 | 95.48 | 575 | 79.78 | 0.0 | Chloroplast beta-amylase isoform 1 |
| blastp_kegg | lcl|rcu:RCOM_0856140 | 1 | 546 | + | 546 | Gaps:9 | 100.00 | 547 | 78.79 | 0.0 | Beta-amylase putative (EC:3.2.1.2) |
| blastp_kegg | lcl|pper:PRUPE_ppa003812mg | 1 | 546 | + | 546 | Gaps:7 | 100.00 | 547 | 78.24 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|pmum:103328871 | 1 | 546 | + | 546 | Gaps:7 | 100.00 | 547 | 77.88 | 0.0 | beta-amylase 3 chloroplastic |
| blastp_kegg | lcl|cmo:103490827 | 1 | 540 | + | 540 | Gaps:10 | 99.44 | 537 | 79.78 | 0.0 | beta-amylase 3 chloroplastic |
| blastp_kegg | lcl|csv:101213455 | 1 | 540 | + | 540 | Gaps:11 | 99.44 | 538 | 79.81 | 0.0 | beta-amylase 3 chloroplastic-like |
| blastp_kegg | lcl|fve:101301974 | 1 | 546 | + | 546 | Gaps:9 | 100.00 | 553 | 76.85 | 0.0 | beta-amylase 3 chloroplastic-like |
| blastp_kegg | lcl|cic:CICLE_v10019566mg | 1 | 546 | + | 546 | Gaps:11 | 100.00 | 551 | 76.04 | 0.0 | hypothetical protein |
| blastp_pdb | 1uko_D | 84 | 508 | + | 425 | Gaps:11 | 86.87 | 495 | 52.09 | 6e-159 | mol:protein length:495 Beta-amylase |
| blastp_pdb | 1uko_C | 84 | 508 | + | 425 | Gaps:11 | 86.87 | 495 | 52.09 | 6e-159 | mol:protein length:495 Beta-amylase |
| blastp_pdb | 1uko_B | 84 | 508 | + | 425 | Gaps:11 | 86.87 | 495 | 52.09 | 6e-159 | mol:protein length:495 Beta-amylase |
| blastp_pdb | 1uko_A | 84 | 508 | + | 425 | Gaps:11 | 86.87 | 495 | 52.09 | 6e-159 | mol:protein length:495 Beta-amylase |
| blastp_pdb | 1ukp_D | 84 | 508 | + | 425 | Gaps:11 | 86.87 | 495 | 52.09 | 6e-159 | mol:protein length:495 Beta-amylase |
| blastp_pdb | 1ukp_C | 84 | 508 | + | 425 | Gaps:11 | 86.87 | 495 | 52.09 | 6e-159 | mol:protein length:495 Beta-amylase |
| blastp_pdb | 1ukp_B | 84 | 508 | + | 425 | Gaps:11 | 86.87 | 495 | 52.09 | 6e-159 | mol:protein length:495 Beta-amylase |
| blastp_pdb | 1ukp_A | 84 | 508 | + | 425 | Gaps:11 | 86.87 | 495 | 52.09 | 6e-159 | mol:protein length:495 Beta-amylase |
| blastp_pdb | 1wdp_A | 84 | 508 | + | 425 | Gaps:11 | 86.87 | 495 | 52.09 | 7e-159 | mol:protein length:495 Beta-amylase |
| blastp_pdb | 1q6c_A | 84 | 508 | + | 425 | Gaps:11 | 86.87 | 495 | 52.09 | 7e-159 | mol:protein length:495 beta-amylase |
| blastp_uniprot_sprot | sp|O23553|BAM3_ARATH | 1 | 546 | + | 546 | Gaps:8 | 100.00 | 548 | 72.26 | 0.0 | Beta-amylase 3 chloroplastic OS Arabidopsis thaliana GN BAM3 PE 1 SV 3 |
| blastp_uniprot_sprot | sp|Q9LIR6|BAM1_ARATH | 84 | 529 | + | 446 | Gaps:8 | 78.96 | 575 | 61.67 | 0.0 | Beta-amylase 1 chloroplastic OS Arabidopsis thaliana GN BAM1 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|O22585|AMYB_MEDSA | 76 | 508 | + | 433 | Gaps:11 | 88.31 | 496 | 51.14 | 2e-159 | Beta-amylase OS Medicago sativa GN BMY1 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|P10538|AMYB_SOYBN | 84 | 508 | + | 425 | Gaps:11 | 86.69 | 496 | 51.63 | 2e-156 | Beta-amylase OS Glycine max GN BMY1 PE 1 SV 3 |
| blastp_uniprot_sprot | sp|O65015|AMYB_TRIRP | 76 | 508 | + | 433 | Gaps:11 | 88.31 | 496 | 50.68 | 2e-155 | Beta-amylase OS Trifolium repens GN BMY1 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|O64407|AMYB_VIGUN | 84 | 508 | + | 425 | Gaps:11 | 86.69 | 496 | 50.93 | 5e-155 | Beta-amylase OS Vigna unguiculata GN BMY1 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|P25853|BAM5_ARATH | 84 | 508 | + | 425 | Gaps:12 | 86.55 | 498 | 50.58 | 4e-152 | Beta-amylase 5 OS Arabidopsis thaliana GN BAM5 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|P82993|AMYB_HORVS | 78 | 508 | + | 431 | Gaps:11 | 81.50 | 535 | 52.06 | 3e-148 | Beta-amylase OS Hordeum vulgare subsp. spontaneum GN BMY1 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|P55005|AMYB_MAIZE | 84 | 508 | + | 425 | Gaps:11 | 88.11 | 488 | 50.47 | 3e-148 | Beta-amylase OS Zea mays GN BMY1 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|P10537|AMYB_IPOBA | 84 | 508 | + | 425 | Gaps:10 | 86.37 | 499 | 49.65 | 2e-147 | Beta-amylase OS Ipomoea batatas GN BMY1 PE 1 SV 4 |
18 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| PANTHER | 84 | 532 | 449 | PTHR31352:SF4 | none | none | none |
| SUPERFAMILY | 83 | 511 | 429 | SSF51445 | none | none | IPR017853 |
| PANTHER | 84 | 532 | 449 | PTHR31352 | none | none | none |
| PRINTS | 243 | 252 | 10 | PR00842 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Plant beta-amylase signature | IPR001371 |
| PRINTS | 484 | 498 | 15 | PR00842 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Plant beta-amylase signature | IPR001371 |
| PRINTS | 402 | 412 | 11 | PR00842 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Plant beta-amylase signature | IPR001371 |
| Pfam | 87 | 504 | 418 | PF01373 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Glycosyl hydrolase family 14 | IPR001554 |
| ProSitePatterns | 165 | 173 | 9 | PS00506 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Beta-amylase active site 1. | IPR018238 |
| Gene3D | 80 | 520 | 441 | G3DSA:3.20.20.80 | none | none | IPR013781 |
| PRINTS | 139 | 157 | 19 | PR00750 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Beta-amylase (glycosyl hydrolase family 14) signature | IPR001554 |
| PRINTS | 399 | 422 | 24 | PR00750 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Beta-amylase (glycosyl hydrolase family 14) signature | IPR001554 |
| PRINTS | 436 | 458 | 23 | PR00750 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Beta-amylase (glycosyl hydrolase family 14) signature | IPR001554 |
| PRINTS | 328 | 347 | 20 | PR00750 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Beta-amylase (glycosyl hydrolase family 14) signature | IPR001554 |
| PRINTS | 253 | 275 | 23 | PR00750 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Beta-amylase (glycosyl hydrolase family 14) signature | IPR001554 |
| PRINTS | 381 | 392 | 12 | PR00750 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Beta-amylase (glycosyl hydrolase family 14) signature | IPR001554 |
| PRINTS | 364 | 380 | 17 | PR00750 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Beta-amylase (glycosyl hydrolase family 14) signature | IPR001554 |
| PRINTS | 161 | 182 | 22 | PR00750 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Beta-amylase (glycosyl hydrolase family 14) signature | IPR001554 |
| PRINTS | 118 | 132 | 15 | PR00750 | "KEGG:00500+3.2.1.2","MetaCyc:PWY-6724","MetaCyc:PWY-842" | Beta-amylase (glycosyl hydrolase family 14) signature | IPR001554 |
5 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2015_nEpiBC_3P | Qrob_Chr12 | 12 | s_1B73S5_217 | v_7050_211 | 28,31 | 26,37 | 28,45 | lod | 4.5 | 11.6 |
| Bourran2_2015_nP_3P | Qrob_Chr12 | 12 | v_10140_295 | v_838_303 | 16 | 14,69 | 18,01 | lod | 5.1 | 13.7 |
| Bourran2_2015_nSecLBD_3P | Qrob_Chr12 | 12 | s_A4YYC_633 | s_2F1IZB_703 | 18,64 | 18,01 | 21,53 | lod | 6.5 | 17.2 |
| Bourran2_2002_QTL17_peak_Bud_burst_A4 | Qrob_Chr12 | 12 | s_1CTJ3J_556 | s_1CTJ3J_556 | 0 | 0 | 25 | lod | 2,9 | 6 |
| Bourran2_2014_nSeqBC_3P | Qrob_Chr12 | 12 | s_1EO8V5_710 | s_1A2VMU_355 | 11,04 | 0 | 32,58 | lod | 1,7196 | 4,7 |
