Protein : Qrob_P0564600.2 Q. robur
Protein Identifier  ? Qrob_P0564600.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) PTHR10217//PTHR10217:SF477 - VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL // SUBFAMILY NOT NAMED (PTHR10217:SF477) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 447  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0006813 potassium ion transport The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0005249 voltage-gated potassium channel activity Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100242379 33 396 + 364 none 57.69 631 83.79 0.0 potassium channel KAT3-like
blastp_kegg lcl|cmo:103503785 33 396 + 364 none 57.87 629 80.77 0.0 potassium channel KAT3
blastp_kegg lcl|csv:101229305 33 396 + 364 none 56.96 639 80.49 0.0 potassium channel KAT3-like
blastp_kegg lcl|csv:101215177 33 396 + 364 none 57.59 632 80.49 0.0 potassium channel KAT3-like
blastp_kegg lcl|pxb:103940087 33 396 + 364 none 58.71 620 78.02 0.0 potassium channel KAT3-like
blastp_kegg lcl|mdm:103456133 33 396 + 364 none 58.71 620 77.75 0.0 potassium channel KAT3
blastp_kegg lcl|pop:POPTR_0006s26140g 33 407 + 375 Gaps:3 63.48 586 77.69 0.0 POPTRDRAFT_802408 K+ rectifying channel family protein
blastp_kegg lcl|mdm:103428839 33 396 + 364 none 82.17 443 75.00 0.0 potassium channel KAT3-like
blastp_kegg lcl|pop:POPTR_0018s00970g 33 396 + 364 none 57.50 633 79.40 0.0 POPTRDRAFT_835791 K+ rectifying channel family protein
blastp_kegg lcl|cit:102623251 33 396 + 364 none 57.59 632 79.95 0.0 potassium channel KAT3-like
blastp_uniprot_sprot sp|P92960|KAT3_ARATH 15 396 + 382 Gaps:5 57.55 662 65.62 2e-171 Potassium channel KAT3 OS Arabidopsis thaliana GN KAT3 PE 1 SV 1
blastp_uniprot_sprot sp|Q0JKV1|AKT1_ORYSJ 34 396 + 363 Gaps:6 38.61 935 61.50 5e-151 Potassium channel AKT1 OS Oryza sativa subsp. japonica GN AKT1 PE 2 SV 1
blastp_uniprot_sprot sp|P0C550|AKT1_ORYSI 34 396 + 363 Gaps:6 38.61 935 61.50 5e-151 Potassium channel AKT1 OS Oryza sativa subsp. indica GN AKT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q38998|AKT1_ARATH 17 394 + 378 Gaps:18 44.57 857 56.81 9e-143 Potassium channel AKT1 OS Arabidopsis thaliana GN AKT1 PE 1 SV 2
blastp_uniprot_sprot sp|A2ZX97|KAT6_ORYSJ 33 396 + 364 Gaps:2 61.05 593 58.56 2e-142 Potassium channel KAT6 OS Oryza sativa subsp. japonica GN Os01g0718700 PE 3 SV 1
blastp_uniprot_sprot sp|Q39128|KAT1_ARATH 34 398 + 365 Gaps:6 53.62 677 55.92 2e-136 Potassium channel KAT1 OS Arabidopsis thaliana GN KAT1 PE 1 SV 2
blastp_uniprot_sprot sp|Q652U9|KAT4_ORYSJ 33 396 + 364 Gaps:2 61.25 591 53.31 1e-133 Potassium channel KAT4 OS Oryza sativa subsp. japonica GN Os06g0254200 PE 3 SV 2
blastp_uniprot_sprot sp|Q6K3T2|KAT1_ORYSJ 34 396 + 363 Gaps:2 50.28 718 55.40 5e-133 Potassium channel KAT1 OS Oryza sativa subsp. japonica GN Os02g0245800 PE 2 SV 1
blastp_uniprot_sprot sp|Q8H569|AKT3_ORYSJ 34 424 + 391 Gaps:7 43.00 907 53.59 8e-133 Potassium channel AKT3 OS Oryza sativa subsp. japonica GN Os07g0175400 PE 3 SV 1
blastp_uniprot_sprot sp|Q38849|KAT2_ARATH 2 398 + 397 Gaps:13 57.39 697 53.25 6e-132 Potassium channel KAT2 OS Arabidopsis thaliana GN KAT2 PE 1 SV 3
rpsblast_cdd gnl|CDD|178734 33 396 + 364 Gaps:2 44.23 823 54.12 1e-131 PLN03192 PLN03192 Voltage-dependent potassium channel Provisional.
rpsblast_cdd gnl|CDD|201279 66 269 + 204 Gaps:25 99.48 194 23.83 5e-16 pfam00520 Ion_trans Ion transport protein. This family contains Sodium Potassium Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices.
rpsblast_cdd gnl|CDD|203792 178 270 + 93 Gaps:19 100.00 74 29.73 2e-08 pfam07885 Ion_trans_2 Ion channel. This family includes the two membrane helix type ion channels found in bacteria.
rpsblast_kog gnl|CDD|35719 34 396 + 363 Gaps:31 53.92 727 40.05 1e-110 KOG0498 KOG0498 KOG0498 K+-channel ERG and related proteins contain PAS/PAC sensor domain [Inorganic ion transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|35721 37 397 + 361 Gaps:40 66.98 536 26.18 5e-31 KOG0500 KOG0500 KOG0500 Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|35722 7 396 + 390 Gaps:44 43.25 971 24.05 1e-29 KOG0501 KOG0501 KOG0501 K+-channel KCNQ [Inorganic ion transport and metabolism].
rpsblast_kog gnl|CDD|35720 23 396 + 374 Gaps:32 43.93 815 21.51 2e-20 KOG0499 KOG0499 KOG0499 Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism Signal transduction mechanisms].

32 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 29 48 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 279 399 121 SSF51206 none none IPR018490
Phobius 109 128 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 238 248 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 34 396 363 PTHR10217 none none none
Phobius 49 67 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 152 171 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 66 269 204 PF00520 none Ion transport protein IPR005821
Phobius 89 108 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 418 446 29 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 129 133 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 134 151 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 34 396 363 PTHR10217:SF477 none none none
Phobius 268 395 128 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PRINTS 67 77 11 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
PRINTS 221 238 18 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
PRINTS 78 87 10 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
PRINTS 247 258 12 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
PRINTS 44 51 8 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
PRINTS 265 274 10 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
Gene3D 335 396 62 G3DSA:2.60.120.10 none none IPR014710
Gene3D 33 273 241 G3DSA:1.10.287.70 none none none
ProSiteProfiles 351 396 46 PS50042 none cAMP/cGMP binding motif profile. IPR000595
Phobius 396 417 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 249 267 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 68 88 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 32 274 243 SSF81324 none none none
Phobius 194 217 24 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 28 28 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 284 334 51 G3DSA:1.10.287.630 none none none

6 Localization

Analysis Start End Length
TMHMM 29 48 19
TMHMM 216 238 22
TMHMM 108 130 22
TMHMM 253 275 22
TMHMM 68 87 19
TMHMM 176 195 19

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting