Protein : Qrob_P0564220.2 Q. robur
Protein Identifier  ? Qrob_P0564220.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=3) PF03468//PF03469//PF03470 - XS domain // XH domain // XS zinc finger domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 634  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0031047 gene silencing by RNA Any process in which RNA molecules inactivate expression of target genes.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_027414 1 633 + 633 Gaps:2 100.00 633 73.14 0.0 XH/XS domain-containing protein
blastp_kegg lcl|cit:102629124 1 633 + 633 Gaps:3 100.00 632 70.89 0.0 myosin-10-like
blastp_kegg lcl|cic:CICLE_v10025142mg 1 633 + 633 Gaps:3 99.68 634 70.89 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0470910 1 632 + 632 Gaps:7 100.00 637 72.53 0.0 hypothetical protein
blastp_kegg lcl|vvi:100252420 1 632 + 632 Gaps:1 100.00 633 69.67 0.0 uncharacterized LOC100252420
blastp_kegg lcl|mdm:103424873 1 633 + 633 Gaps:1 100.00 634 69.40 0.0 putative leucine-rich repeat-containing protein DDB_G0290503
blastp_kegg lcl|vvi:100257549 1 632 + 632 Gaps:8 100.00 626 69.97 0.0 uncharacterized LOC100257549
blastp_kegg lcl|pmum:103328166 16 633 + 618 Gaps:1 97.48 635 70.44 0.0 interaptin-like
blastp_kegg lcl|mdm:103438740 1 633 + 633 Gaps:1 100.00 634 68.45 0.0 putative leucine-rich repeat-containing protein DDB_G0290503
blastp_kegg lcl|pper:PRUPE_ppa002776mg 16 633 + 618 Gaps:1 97.48 635 70.27 0.0 hypothetical protein
rpsblast_cdd gnl|CDD|202652 501 632 + 132 none 100.00 132 58.33 4e-41 pfam03469 XH XH domain. The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important.
rpsblast_cdd gnl|CDD|190648 114 227 + 114 Gaps:3 99.14 116 38.26 2e-27 pfam03468 XS XS domain. The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition.
rpsblast_cdd gnl|CDD|190649 42 84 + 43 none 100.00 43 81.40 3e-17 pfam03470 zf-XS XS zinc finger domain. This domain is a putative nucleic acid binding zinc finger found in proteins that also contain an XS domain.
rpsblast_cdd gnl|CDD|162739 245 484 + 240 Gaps:14 20.36 1179 18.75 7e-09 TIGR02168 SMC_prok_B chromosome segregation protein SMC common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
rpsblast_cdd gnl|CDD|162740 250 485 + 236 Gaps:29 35.74 1164 21.15 2e-08 TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
rpsblast_cdd gnl|CDD|31389 236 484 + 249 Gaps:1 21.32 1163 22.18 6e-08 COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning].
rpsblast_kog gnl|CDD|35383 229 495 + 267 Gaps:141 34.51 1930 31.23 5e-08 KOG0161 KOG0161 KOG0161 Myosin class II heavy chain [Cytoskeleton].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 376 431 56 Coil none none none
Coils 255 276 22 Coil none none none
Pfam 501 632 132 PF03469 none XH domain IPR005379
Coils 439 463 25 Coil none none none
PANTHER 117 633 517 PTHR21596:SF3 none none none
Pfam 114 227 114 PF03468 none XS domain IPR005380
Pfam 42 84 43 PF03470 none XS zinc finger domain IPR005381
Coils 346 367 22 Coil none none none
PANTHER 117 633 517 PTHR21596 none none none
Coils 319 340 22 Coil none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting