Protein : Qrob_P0561400.2 Q. robur
Protein Identifier  ? Qrob_P0561400.2 Organism . Name  Quercus robur
Score  77.1 Score Type  egn
Protein Description  (M=1) K02732 - 20S proteasome subunit beta 6 [EC:3.4.25.1] Code Enzyme  EC:3.4.25.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 224  
Kegg Orthology  K02732
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0004298 threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO:0005839 proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO:0051603 proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
GO:0004175 endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.

47 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100266090 1 223 + 223 none 100.00 223 93.72 1e-155 proteasome subunit beta type-1-like
blastp_kegg lcl|tcc:TCM_005507 1 223 + 223 none 100.00 223 92.38 6e-155 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
blastp_kegg lcl|rcu:RCOM_1612220 1 223 + 223 none 100.00 223 92.38 2e-154 proteasome subunit beta type putative (EC:3.4.25.1)
blastp_kegg lcl|cmo:103483350 1 223 + 223 none 100.00 223 92.38 2e-154 proteasome subunit beta type-1
blastp_kegg lcl|mtr:MTR_2g098010 1 223 + 223 none 96.54 231 92.38 7e-154 Proteasome subunit beta type
blastp_kegg lcl|pxb:103938960 1 223 + 223 none 100.00 223 92.38 1e-153 proteasome subunit beta type-1
blastp_kegg lcl|mdm:103418407 1 223 + 223 none 100.00 223 92.38 1e-153 proteasome subunit beta type-1
blastp_kegg lcl|gmx:100306148 1 223 + 223 none 100.00 223 92.38 2e-153 uncharacterized LOC100306148
blastp_kegg lcl|mdm:103426307 1 223 + 223 none 100.00 223 92.38 3e-153 proteasome subunit beta type-1
blastp_kegg lcl|mtr:MTR_5g079740 1 223 + 223 none 100.00 223 91.48 7e-153 Proteasome subunit beta type
blastp_pdb 1iru_1 8 223 + 216 Gaps:4 99.53 213 48.58 1e-65 mol:protein length:213 20S proteasome
blastp_pdb 1iru_M 8 223 + 216 Gaps:4 99.53 213 48.58 1e-65 mol:protein length:213 20S proteasome
blastp_pdb 3unh_Z 8 223 + 216 Gaps:6 99.53 213 48.11 4e-65 mol:protein length:213 Proteasome subunit beta type-1
blastp_pdb 3unh_L 8 223 + 216 Gaps:6 99.53 213 48.11 4e-65 mol:protein length:213 Proteasome subunit beta type-1
blastp_pdb 3unf_Z 8 223 + 216 Gaps:6 99.53 213 48.11 4e-65 mol:protein length:213 Proteasome subunit beta type-1
blastp_pdb 3unf_L 8 223 + 216 Gaps:6 99.53 213 48.11 4e-65 mol:protein length:213 Proteasome subunit beta type-1
blastp_pdb 3une_2 8 223 + 216 Gaps:6 99.53 213 48.11 4e-65 mol:protein length:213 Proteasome subunit beta type-1
blastp_pdb 3une_n 8 223 + 216 Gaps:6 99.53 213 48.11 4e-65 mol:protein length:213 Proteasome subunit beta type-1
blastp_pdb 3une_Z 8 223 + 216 Gaps:6 99.53 213 48.11 4e-65 mol:protein length:213 Proteasome subunit beta type-1
blastp_pdb 3une_L 8 223 + 216 Gaps:6 99.53 213 48.11 4e-65 mol:protein length:213 Proteasome subunit beta type-1
blastp_uniprot_sprot sp|O82531|PSB1_PETHY 1 223 + 223 none 100.00 223 91.03 4e-153 Proteasome subunit beta type-1 OS Petunia hybrida GN PBF1 PE 2 SV 1
blastp_uniprot_sprot sp|P42742|PSB1_ARATH 1 223 + 223 none 100.00 223 85.65 6e-144 Proteasome subunit beta type-1 OS Arabidopsis thaliana GN PBF1 PE 1 SV 2
blastp_uniprot_sprot sp|O64464|PSB1_ORYSJ 4 223 + 220 Gaps:1 99.10 221 82.19 6e-135 Proteasome subunit beta type-1 OS Oryza sativa subsp. japonica GN PBF1 PE 2 SV 1
blastp_uniprot_sprot sp|Q86A21|PSB1_DICDI 3 223 + 221 Gaps:8 94.49 236 52.91 6e-75 Proteasome subunit beta type-1 OS Dictyostelium discoideum GN psmB1 PE 3 SV 1
blastp_uniprot_sprot sp|P20618|PSB1_HUMAN 5 223 + 219 Gaps:6 89.21 241 48.37 2e-65 Proteasome subunit beta type-1 OS Homo sapiens GN PSMB1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9IB83|PSB1B_CARAU 5 223 + 219 Gaps:4 90.72 237 47.44 4e-65 Proteasome subunit beta type-1-B OS Carassius auratus GN psmb1-B PE 2 SV 1
blastp_uniprot_sprot sp|Q9IB84|PSB1A_CARAU 5 223 + 219 Gaps:4 90.34 238 47.44 5e-65 Proteasome subunit beta type-1-A OS Carassius auratus GN psmb1-A PE 2 SV 1
blastp_uniprot_sprot sp|O09061|PSB1_MOUSE 5 223 + 219 Gaps:6 89.58 240 47.91 6e-65 Proteasome subunit beta type-1 OS Mus musculus GN Psmb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q2TBX6|PSB1_BOVIN 5 223 + 219 Gaps:6 89.21 241 47.91 8e-65 Proteasome subunit beta type-1 OS Bos taurus GN PSMB1 PE 1 SV 1
blastp_uniprot_sprot sp|P18421|PSB1_RAT 5 223 + 219 Gaps:6 89.58 240 47.44 8e-64 Proteasome subunit beta type-1 OS Rattus norvegicus GN Psmb1 PE 1 SV 3

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 9 222 214 SSF56235 none none IPR029055
Pfam 13 208 196 PF00227 "Reactome:REACT_11045","Reactome:REACT_13","Reactome:REACT_13635","Reactome:REACT_152","Reactome:REACT_1538","Reactome:REACT_383","Reactome:REACT_578","Reactome:REACT_6185","Reactome:REACT_6850" Proteasome subunit IPR001353
ProSiteProfiles 15 208 194 PS51476 none Proteasome beta-type subunit profile. IPR023333
PANTHER 3 223 221 PTHR11599 none none none
PANTHER 3 223 221 PTHR11599:SF52 none none none
ProSitePatterns 19 66 48 PS00854 "Reactome:REACT_11045","Reactome:REACT_13","Reactome:REACT_13635","Reactome:REACT_152","Reactome:REACT_1538","Reactome:REACT_383","Reactome:REACT_578","Reactome:REACT_6185","Reactome:REACT_6850" Proteasome beta-type subunits signature. IPR016050
Gene3D 8 223 216 G3DSA:3.60.20.10 none none IPR029055

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting