Protein : Qrob_P0558210.2 Q. robur
Protein Identifier  ? Qrob_P0558210.2 Organism . Name  Quercus robur
Score  41.1 Score Type  egn
Protein Description  (M=3) K00281 - glycine dehydrogenase [EC:1.4.4.2] Code Enzyme  EC:1.4.4.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 246  
Kegg Orthology  K00281
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0006546 glycine catabolic process The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid.
GO:0004375 glycine dehydrogenase (decarboxylating) activity Catalysis of the reaction: glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103410622 61 238 + 178 Gaps:12 76.60 235 62.22 3e-66 glycine dehydrogenase (decarboxylating) mitochondrial-like
blastp_kegg lcl|pxb:103952059 66 238 + 173 Gaps:14 16.49 1049 66.47 5e-66 glycine dehydrogenase (decarboxylating) mitochondrial (EC:1.4.4.2)
blastp_kegg lcl|mdm:103455829 66 238 + 173 Gaps:14 16.49 1049 66.47 5e-66 glycine dehydrogenase (decarboxylating) mitochondrial
blastp_kegg lcl|tcc:TCM_037284 66 238 + 173 Gaps:14 16.48 1050 65.32 2e-65 Glycine decarboxylase P-protein 1
blastp_kegg lcl|mdm:103410623 106 238 + 133 Gaps:7 55.34 253 74.29 2e-65 glycine dehydrogenase (decarboxylating) mitochondrial-like
blastp_kegg lcl|gmx:100804092 107 238 + 132 Gaps:7 81.76 170 71.94 1e-64 glycine dehydrogenase [decarboxylating] mitochondrial-like
blastp_kegg lcl|cmo:103487785 66 238 + 173 Gaps:14 16.52 1047 64.74 1e-64 glycine dehydrogenase (decarboxylating) mitochondrial
blastp_kegg lcl|rcu:RCOM_0797460 66 238 + 173 Gaps:14 16.37 1057 64.16 2e-64 glycine dehydrogenase putative (EC:1.3.1.74)
blastp_kegg lcl|csv:101217746 66 238 + 173 Gaps:14 16.54 1046 64.16 4e-64 glycine dehydrogenase [decarboxylating] mitochondrial-like
blastp_kegg lcl|csv:101228855 66 238 + 173 Gaps:14 19.66 880 64.16 4e-64 glycine dehydrogenase [decarboxylating] mitochondrial-like
blastp_uniprot_sprot sp|P26969|GCSP_PEA 66 238 + 173 Gaps:14 16.37 1057 62.43 7e-64 Glycine dehydrogenase (decarboxylating) mitochondrial OS Pisum sativum GN GDCSP PE 1 SV 1
blastp_uniprot_sprot sp|Q94B78|GCSP1_ARATH 107 238 + 132 Gaps:7 13.40 1037 72.66 1e-61 Glycine dehydrogenase (decarboxylating) 1 mitochondrial OS Arabidopsis thaliana GN GLDP1 PE 1 SV 2
blastp_uniprot_sprot sp|O80988|GCSP2_ARATH 66 238 + 173 Gaps:14 16.57 1044 61.27 2e-61 Glycine dehydrogenase (decarboxylating) 2 mitochondrial OS Arabidopsis thaliana GN GLDP2 PE 1 SV 1
blastp_uniprot_sprot sp|O49954|GCSP_SOLTU 66 238 + 173 Gaps:14 16.71 1035 60.12 3e-61 Glycine dehydrogenase (decarboxylating) mitochondrial OS Solanum tuberosum GN GDCSP PE 2 SV 1
blastp_uniprot_sprot sp|P49361|GCSPA_FLAPR 66 238 + 173 Gaps:14 16.68 1037 59.54 2e-59 Glycine dehydrogenase (decarboxylating) A mitochondrial OS Flaveria pringlei GN GDCSPA PE 2 SV 1
blastp_uniprot_sprot sp|P49362|GCSPB_FLAPR 66 238 + 173 Gaps:14 16.73 1034 59.54 2e-59 Glycine dehydrogenase (decarboxylating) B mitochondrial OS Flaveria pringlei GN GDCSPB PE 3 SV 1
blastp_uniprot_sprot sp|O49850|GCSP_FLAAN 66 238 + 173 Gaps:14 16.73 1034 59.54 3e-59 Glycine dehydrogenase (decarboxylating) mitochondrial OS Flaveria anomala GN GDCSP PE 3 SV 1
blastp_uniprot_sprot sp|O49852|GCSP_FLATR 66 238 + 173 Gaps:14 16.73 1034 59.54 3e-59 Glycine dehydrogenase (decarboxylating) mitochondrial OS Flaveria trinervia GN GDCSPA PE 3 SV 1
blastp_uniprot_sprot sp|B2J427|GCSP_NOSP7 66 236 + 171 Gaps:14 17.47 979 49.12 2e-44 Glycine dehydrogenase (decarboxylating) OS Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN gcvP PE 3 SV 1
blastp_uniprot_sprot sp|Q3M9G1|GCSP_ANAVT 66 237 + 172 Gaps:14 17.66 974 47.09 4e-44 Glycine dehydrogenase (decarboxylating) OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN gcvP PE 3 SV 1
rpsblast_cdd gnl|CDD|178035 1 238 + 238 Gaps:49 25.48 993 58.50 8e-67 PLN02414 PLN02414 glycine dehydrogenase (decarboxylating).
rpsblast_cdd gnl|CDD|180041 106 237 + 132 Gaps:7 14.57 954 50.36 4e-59 PRK05367 PRK05367 glycine dehydrogenase Provisional.
rpsblast_cdd gnl|CDD|129553 66 237 + 172 Gaps:14 18.32 939 47.09 3e-47 TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P H L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
rpsblast_cdd gnl|CDD|171585 66 236 + 171 Gaps:32 17.71 954 46.75 2e-37 PRK12566 PRK12566 glycine dehydrogenase Provisional.
rpsblast_cdd gnl|CDD|31207 66 233 + 168 Gaps:35 33.67 496 44.31 8e-37 COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|99737 1 183 + 183 Gaps:48 51.51 398 35.12 1e-26 cd00613 GDC-P Glycine cleavage system P-protein alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P H L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein < > S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life..
rpsblast_cdd gnl|CDD|179838 60 203 + 144 Gaps:35 28.90 481 37.41 8e-21 PRK04366 PRK04366 glycine dehydrogenase subunit 2 Validated.
rpsblast_kog gnl|CDD|37251 106 238 + 133 Gaps:7 13.99 1001 65.71 6e-57 KOG2040 KOG2040 KOG2040 Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 74 84 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 106 238 133 PTHR11773 "KEGG:00260+1.4.4.2";signature_desc=GLYCINE DEHYDROGENASE none IPR020581
Phobius 1 56 56 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 57 73 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 109 245 137 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 6 186 181 SSF53383 none none IPR015424
Phobius 85 108 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting