Protein : Qrob_P0557650.2 Q. robur
Protein Identifier  ? Qrob_P0557650.2 Organism . Name  Quercus robur
Protein Description  (M=20) PF01357//PF03330 - Pollen allergen // Rare lipoprotein A (RlpA)-like double-psi beta-barrel Alias (in v1)  Qrob_P0197750.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 252  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005576 extracellular region The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO:0019953 sexual reproduction A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0003s08140g 1 251 + 251 Gaps:3 100.00 250 71.20 7e-132 Expansin-related protein 1 precursor
blastp_kegg lcl|rcu:RCOM_0120910 11 251 + 241 Gaps:2 96.76 247 72.80 1e-129 Major pollen allergen Ory s 1 precursor putative
blastp_kegg lcl|tcc:TCM_015863 1 250 + 250 Gaps:1 99.60 250 70.68 2e-128 Expansin-like B1 BETA 3.1 EXLB1
blastp_kegg lcl|pop:POPTR_0001s15150g 1 250 + 250 Gaps:2 99.60 251 70.00 4e-127 Expansin-related protein 1 precursor
blastp_kegg lcl|pxb:103966892 1 251 + 251 Gaps:2 100.00 251 69.72 3e-126 expansin-like B1
blastp_kegg lcl|tcc:TCM_015865 1 250 + 250 Gaps:1 99.60 252 68.13 1e-125 Expansin-like B1 BETA 3.1 EXLB1
blastp_kegg lcl|pper:PRUPE_ppa010376mg 1 251 + 251 Gaps:3 100.00 252 68.65 8e-125 hypothetical protein
blastp_kegg lcl|fve:101311867 8 251 + 244 Gaps:1 98.39 249 68.57 3e-124 expansin-like B1-like
blastp_kegg lcl|cit:102624467 8 250 + 243 Gaps:1 97.98 247 70.66 3e-123 expansin-like B1-like
blastp_kegg lcl|cic:CICLE_v10002142mg 8 250 + 243 Gaps:1 88.64 273 70.66 5e-123 hypothetical protein
blastp_pdb 2hcz_X 32 250 + 219 Gaps:8 91.02 245 33.18 1e-37 mol:protein length:245 Beta-expansin 1a
blastp_pdb 1n10_B 27 246 + 220 Gaps:12 92.95 241 31.25 4e-36 mol:protein length:241 Pollen allergen Phl p 1
blastp_pdb 1n10_A 27 246 + 220 Gaps:12 92.95 241 31.25 4e-36 mol:protein length:241 Pollen allergen Phl p 1
blastp_uniprot_sprot sp|O23547|EXLB1_ARATH 9 251 + 243 Gaps:2 97.20 250 60.91 3e-109 Expansin-like B1 OS Arabidopsis thaliana GN EXLB1 PE 2 SV 2
blastp_uniprot_sprot sp|Q850K7|EXLB1_ORYSJ 1 250 + 250 Gaps:5 98.83 256 42.69 3e-67 Expansin-like B1 OS Oryza sativa subsp. japonica GN EXLB1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SVE5|EXLA2_ARATH 65 251 + 187 Gaps:2 71.32 265 41.27 5e-49 Expansin-like A2 OS Arabidopsis thaliana GN EXLA2 PE 2 SV 1
blastp_uniprot_sprot sp|Q10S70|EXLA1_ORYSJ 31 251 + 221 Gaps:5 79.57 279 39.64 5e-49 Expansin-like A1 OS Oryza sativa subsp. japonica GN EXLA1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LZT5|EXLA3_ARATH 65 251 + 187 Gaps:2 71.86 263 40.21 2e-48 Expansin-like A3 OS Arabidopsis thaliana GN EXLA3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LZT4|EXLA1_ARATH 65 251 + 187 Gaps:3 71.70 265 40.00 2e-47 Expansin-like A1 OS Arabidopsis thaliana GN EXLA1 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XCL0|EXLA2_ORYSJ 47 250 + 204 Gaps:4 75.64 275 41.35 5e-44 Expansin-like A2 OS Oryza sativa subsp. japonica GN EXLA2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8H274|EXLA3_ORYSJ 65 246 + 182 Gaps:1 66.30 276 40.44 2e-42 Expansin-like A3 OS Oryza sativa subsp. japonica GN EXLA3 PE 2 SV 1
blastp_uniprot_sprot sp|Q40638|EXPB1_ORYSJ 27 249 + 223 Gaps:12 85.02 267 32.16 2e-38 Expansin-B1 OS Oryza sativa subsp. japonica GN EXPB1a PE 1 SV 2
blastp_uniprot_sprot sp|Q8H7T4|EXB10_ORYSJ 29 250 + 222 Gaps:8 84.64 267 31.86 3e-37 Expansin-B10 OS Oryza sativa subsp. japonica GN EXPB10 PE 2 SV 1
rpsblast_cdd gnl|CDD|178594 3 251 + 249 Gaps:2 100.00 247 72.87 1e-121 PLN03023 PLN03023 Expansin-like B1 Provisional.
rpsblast_cdd gnl|CDD|165628 11 244 + 234 Gaps:21 95.14 247 31.49 4e-19 PLN00050 PLN00050 expansin A Provisional.
rpsblast_cdd gnl|CDD|177787 17 250 + 234 Gaps:23 93.36 256 27.20 2e-15 PLN00193 PLN00193 expansin-A Provisional.
rpsblast_cdd gnl|CDD|201746 154 235 + 82 Gaps:4 97.56 82 35.00 2e-12 pfam01357 Pollen_allerg_1 Pollen allergen. This family contains allergens lol PI PII and PIII from Lolium perenne.
rpsblast_cdd gnl|CDD|202595 63 140 + 78 Gaps:13 100.00 77 36.36 2e-11 pfam03330 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 65 76 12 PR00829 none Major pollen allergen Lol pI signature IPR005795
PRINTS 85 95 11 PR00829 none Major pollen allergen Lol pI signature IPR005795
PRINTS 222 239 18 PR00829 none Major pollen allergen Lol pI signature IPR005795
PRINTS 155 170 16 PR00829 none Major pollen allergen Lol pI signature IPR005795
PRINTS 171 186 16 PR00829 none Major pollen allergen Lol pI signature IPR005795
SUPERFAMILY 15 149 135 SSF50685 none none IPR009009
Pfam 64 140 77 PF03330 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR009009
SMART 63 140 78 SM00837 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR007112
Phobius 1 8 8 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 5 251 247 PTHR31692 none none none
SUPERFAMILY 151 246 96 SSF49590 none none IPR007117
ProSiteProfiles 47 150 104 PS50842 none Expansin, family-45 endoglucanase-like domain profile. IPR007112
Gene3D 146 250 105 G3DSA:2.60.40.760 none none IPR007117
Phobius 26 251 226 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 21 25 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 153 235 83 PF01357 none Pollen allergen IPR007117
Gene3D 13 145 133 G3DSA:2.40.40.10 none none IPR014733
PANTHER 5 251 247 PTHR31692:SF2 none none none
ProSiteProfiles 164 246 83 PS50843 none Expansin, Cellulose-binding-like domain profile. IPR007117
PRINTS 28 43 16 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 232 246 15 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 67 85 19 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 133 149 17 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 192 206 15 PR01225 none Expansin/Lol pI family signature IPR007118
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 9 20 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_EUK 1 25 24

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting