Protein : Qrob_P0555620.2 Q. robur
Protein Identifier  ? Qrob_P0555620.2 Organism . Name  Quercus robur
Score  93.0 Score Type  egn
Protein Description  (M=1) KOG0311//KOG0317//KOG0823//KOG1813//KOG2177//KOG2660//KOG4159 - Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones]. // Predicted E3 ubiquitin ligase integral peroxisomal membrane protein [Posttranslational modification protein turnover chaperones]. // Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones]. // Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones]. // Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones]. // Locus-specific chromosome binding proteins [Function unknown]. // Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 331  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0004176 ATP-dependent peptidase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102612358 13 306 + 294 Gaps:25 54.45 494 83.27 2e-160 LON peptidase N-terminal domain and RING finger protein 3-like
blastp_kegg lcl|csv:101224378 13 306 + 294 Gaps:25 55.24 487 82.53 4e-157 LON peptidase N-terminal domain and RING finger protein 2-like
blastp_kegg lcl|csv:101204351 13 306 + 294 Gaps:25 55.24 487 82.53 4e-157 LON peptidase N-terminal domain and RING finger protein 2-like
blastp_kegg lcl|pop:POPTR_0012s07000g 9 306 + 298 Gaps:27 55.65 487 81.92 1e-156 POPTRDRAFT_772889 hypothetical protein
blastp_kegg lcl|cmo:103494330 13 306 + 294 Gaps:25 19.59 1373 82.53 9e-150 probable receptor-like protein kinase At5g61350
blastp_kegg lcl|rcu:RCOM_1471070 9 306 + 298 Gaps:27 16.46 1646 81.92 2e-148 kinase putative (EC:2.7.10.2)
blastp_kegg lcl|tcc:TCM_014111 13 306 + 294 Gaps:25 53.69 501 79.55 4e-148 Zinc finger (C3HC4-type RING finger) family protein isoform 1
blastp_kegg lcl|pxb:103931144 13 306 + 294 Gaps:25 55.12 488 78.07 1e-147 LON peptidase N-terminal domain and RING finger protein 1
blastp_kegg lcl|pxb:103931381 13 306 + 294 Gaps:25 55.12 488 77.32 9e-147 LON peptidase N-terminal domain and RING finger protein 1-like
blastp_kegg lcl|mdm:103431228 13 306 + 294 Gaps:25 46.62 577 77.32 2e-143 uncharacterized LOC103431228
blastp_pdb 3l11_A 145 224 + 80 Gaps:6 74.78 115 31.40 1e-08 mol:protein length:115 E3 ubiquitin-protein ligase RNF168
blastp_pdb 2jmd_A 147 191 + 45 Gaps:1 73.02 63 43.48 3e-08 mol:protein length:63 TNF receptor-associated factor 6
blastp_pdb 2eci_A 141 191 + 51 Gaps:1 60.47 86 40.38 1e-07 mol:protein length:86 TNF receptor-associated factor 6
blastp_pdb 3hcu_C 141 191 + 51 Gaps:1 44.07 118 40.38 3e-07 mol:protein length:118 TNF receptor-associated factor 6
blastp_pdb 3hcu_A 141 191 + 51 Gaps:1 44.07 118 40.38 3e-07 mol:protein length:118 TNF receptor-associated factor 6
blastp_pdb 3hct_A 141 191 + 51 Gaps:1 44.07 118 40.38 3e-07 mol:protein length:118 TNF receptor-associated factor 6
blastp_pdb 3hcs_B 141 191 + 51 Gaps:1 30.59 170 40.38 1e-06 mol:protein length:170 TNF receptor-associated factor 6
blastp_pdb 3hcs_A 141 191 + 51 Gaps:1 30.59 170 40.38 1e-06 mol:protein length:170 TNF receptor-associated factor 6
blastp_pdb 2ecj_A 149 186 + 38 Gaps:3 70.69 58 39.02 2e-06 mol:protein length:58 Tripartite motif-containing protein 39
blastp_pdb 2ecv_A 145 187 + 43 Gaps:6 57.65 85 40.82 7e-06 mol:protein length:85 Tripartite motif-containing protein 5
blastp_uniprot_sprot sp|Q1L5Z9|LONF2_HUMAN 129 328 + 200 Gaps:11 27.45 754 37.20 2e-34 LON peptidase N-terminal domain and RING finger protein 2 OS Homo sapiens GN LONRF2 PE 2 SV 3
blastp_uniprot_sprot sp|Q17RB8|LONF1_HUMAN 146 301 + 156 Gaps:9 20.83 773 43.48 2e-34 LON peptidase N-terminal domain and RING finger protein 1 OS Homo sapiens GN LONRF1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9D4H7|LONF3_MOUSE 144 301 + 158 Gaps:9 21.65 753 42.94 1e-32 LON peptidase N-terminal domain and RING finger protein 3 OS Mus musculus GN Lonrf3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8HXH0|LONF3_MACFA 144 301 + 158 Gaps:9 22.70 718 42.94 4e-32 LON peptidase N-terminal domain and RING finger protein 3 OS Macaca fascicularis GN LONRF3 PE 2 SV 1
blastp_uniprot_sprot sp|Q496Y0|LONF3_HUMAN 144 301 + 158 Gaps:9 21.48 759 42.94 5e-32 LON peptidase N-terminal domain and RING finger protein 3 OS Homo sapiens GN LONRF3 PE 1 SV 1
blastp_uniprot_sprot sp|O60106|YOXA_SCHPO 146 314 + 169 Gaps:25 38.27 486 30.65 3e-18 LON peptidase N-terminal domain and RING finger protein C14F5.10c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC14F5.10c PE 4 SV 1
blastp_uniprot_sprot sp|Q03605|YNN1_CAEEL 143 223 + 81 Gaps:1 51.25 160 35.37 2e-09 Uncharacterized RING finger protein T02C1.1 OS Caenorhabditis elegans GN T02C1.1 PE 4 SV 1
blastp_uniprot_sprot sp|Q7T308|RN168_DANRE 125 219 + 95 Gaps:8 20.89 474 33.33 6e-09 E3 ubiquitin-protein ligase RNF168 OS Danio rerio GN rnf168 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SYU4|PEX10_ARATH 51 188 + 138 Gaps:5 37.01 381 30.50 8e-09 Peroxisome biogenesis factor 10 OS Arabidopsis thaliana GN PEX10 PE 1 SV 1
blastp_uniprot_sprot sp|Q9D9R0|RN125_MOUSE 147 190 + 44 Gaps:2 19.74 233 52.17 5e-08 E3 ubiquitin-protein ligase RNF125 OS Mus musculus GN Rnf125 PE 2 SV 3

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 40 100 61 G3DSA:1.25.40.10 none none IPR011990
ProSitePatterns 164 173 10 PS00518 none Zinc finger RING-type signature. IPR017907
SUPERFAMILY 38 101 64 SSF48452 none none none
ProSiteProfiles 149 187 39 PS50089 none Zinc finger RING-type profile. IPR001841
Gene3D 142 212 71 G3DSA:3.30.40.10 none none IPR013083
Pfam 233 306 74 PF02190 none ATP-dependent protease La (LON) domain IPR003111
SMART 149 186 38 SM00184 none Ring finger IPR001841
SUPERFAMILY 233 306 74 SSF88697 none none IPR015947
SUPERFAMILY 143 211 69 SSF57850 none none none
PANTHER 146 306 161 PTHR23327 none none none
Pfam 149 186 38 PF13923 none Zinc finger, C3HC4 type (RING finger) none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting