Protein : Qrob_P0543210.2 Q. robur
Protein Identifier  ? Qrob_P0543210.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR31673:SF2 - COBRA-LIKE PROTEIN 4 (PTHR31673:SF2) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 498  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0010215 cellulose microfibril organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall.
GO:0016049 cell growth The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
GO:0031225 anchored component of membrane The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102610075 22 497 + 476 Gaps:37 98.22 449 84.81 0.0 COBRA-like protein 4-like
blastp_kegg lcl|pper:PRUPE_ppa005430mg 1 494 + 494 Gaps:41 98.26 461 82.78 0.0 hypothetical protein
blastp_kegg lcl|pmum:103338642 1 494 + 494 Gaps:41 98.26 461 82.78 0.0 COBRA-like protein 4
blastp_kegg lcl|fve:101307493 1 494 + 494 Gaps:43 99.12 455 80.71 0.0 COBRA-like protein 4-like
blastp_kegg lcl|pop:POPTR_0015s07110g 16 488 + 473 Gaps:35 96.69 453 81.96 0.0 phytochelatin synthetase-like family protein
blastp_kegg lcl|mdm:103415302 1 494 + 494 Gaps:44 98.25 458 80.89 0.0 COBRA-like protein 4
blastp_kegg lcl|mdm:103437902 1 494 + 494 Gaps:44 97.61 461 80.89 0.0 COBRA-like protein 4
blastp_kegg lcl|mdm:103455435 32 494 + 463 Gaps:35 98.17 436 83.41 0.0 COBRA-like protein 4
blastp_kegg lcl|pxb:103937916 1 494 + 494 Gaps:44 98.47 457 80.44 0.0 COBRA-like protein 4
blastp_kegg lcl|vvi:100258803 1 494 + 494 Gaps:37 98.92 462 79.87 0.0 COBRA-like protein 4
blastp_uniprot_sprot sp|Q9LFW3|COBL4_ARATH 50 497 + 448 Gaps:36 95.59 431 83.98 0.0 COBRA-like protein 4 OS Arabidopsis thaliana GN COBL4 PE 2 SV 2
blastp_uniprot_sprot sp|Q10JL1|COBL5_ORYSJ 36 494 + 459 Gaps:70 98.08 468 69.50 0.0 COBRA-like protein 5 OS Oryza sativa subsp. japonica GN BC1 PE 2 SV 1
blastp_uniprot_sprot sp|A2XHZ9|COBL5_ORYSI 36 494 + 459 Gaps:70 98.08 468 69.50 0.0 COBRA-like protein 5 OS Oryza sativa subsp. indica GN BC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q94KT8|COBRA_ARATH 24 476 + 453 Gaps:46 93.64 456 67.68 0.0 Protein COBRA OS Arabidopsis thaliana GN COB PE 2 SV 1
blastp_uniprot_sprot sp|Q6Z4G7|COBL6_ORYSJ 50 491 + 442 Gaps:58 95.34 451 68.37 0.0 COBRA-like protein 6 OS Oryza sativa subsp. japonica GN BC1L7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SRT7|COBL1_ARATH 37 494 + 458 Gaps:46 95.13 452 66.05 0.0 COBRA-like protein 1 OS Arabidopsis thaliana GN COBL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q60E70|COBL3_ORYSJ 48 496 + 449 Gaps:47 91.90 457 69.29 0.0 COBRA-like protein 3 OS Oryza sativa subsp. japonica GN BC1L4 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L8Q7|COBL2_ARATH 28 496 + 469 Gaps:41 98.41 441 63.82 0.0 COBRA-like protein 2 OS Arabidopsis thaliana GN COBL2 PE 1 SV 2
blastp_uniprot_sprot sp|Q6Z4G8|COBL1_ORYSJ 32 497 + 466 Gaps:45 95.74 446 63.00 0.0 COBRA-like protein 1 OS Oryza sativa subsp. japonica GN BC1L6 PE 2 SV 1
blastp_uniprot_sprot sp|Q75IW1|COBL2_ORYSJ 42 493 + 452 Gaps:46 90.39 458 66.43 0.0 COBRA-like protein 2 OS Oryza sativa subsp. japonica GN BC1L2 PE 2 SV 1
rpsblast_cdd gnl|CDD|191108 74 273 + 200 Gaps:39 100.00 169 64.50 8e-72 pfam04833 COBRA COBRA-like protein. Family of plant proteins are designated COBRA-like (COBL) proteins. The 12 Arabidopsis members of the family are all GPI-liked. Some members of this family are annotated as phytochelatin synthase but these annotations are incorrect.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 263 497 235 PTHR31673:SF2 none none none
Phobius 476 494 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 74 273 200 PF04833 none COBRA-like protein IPR006918
Phobius 495 497 3 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProDom 58 233 176 PD140986 none PHYTOCHELATIN GLYCOPROTEIN COBRA-LIKE PRECURSOR SIGNAL MEMBRANE GPI-ANCHOR LIPOPROTEIN SYNTHETASE SYNTHETASE-LIKE IPR006918
PANTHER 22 227 206 PTHR31673 none none none
PANTHER 22 227 206 PTHR31673:SF2 none none none
Phobius 1 475 475 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 263 497 235 PTHR31673 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting