Protein : Qrob_P0543200.2 Q. robur
Protein Identifier  ? Qrob_P0543200.2 Organism . Name  Quercus robur
Score  80.1 Score Type  egn
Protein Description  (M=3) PTHR31673:SF2 - COBRA-LIKE PROTEIN 4 (PTHR31673:SF2) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 432  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0010215 cellulose microfibril organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall.
GO:0016049 cell growth The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
GO:0031225 anchored component of membrane The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_014311 1 431 + 431 Gaps:7 100.00 438 68.49 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
blastp_kegg lcl|tcc:TCM_018950 11 431 + 421 Gaps:6 98.84 432 68.15 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
blastp_kegg lcl|pop:POPTR_0015s07120g 1 431 + 431 Gaps:8 100.00 439 68.79 0.0 phytochelatin synthetase-like family protein
blastp_kegg lcl|cit:102610075 9 431 + 423 Gaps:8 95.10 449 68.15 0.0 COBRA-like protein 4-like
blastp_kegg lcl|sot:102598920 8 431 + 424 Gaps:7 99.31 434 67.05 0.0 COBRA-like protein 4-like
blastp_kegg lcl|pmum:103338661 1 430 + 430 Gaps:11 99.77 438 68.42 0.0 COBRA-like protein 4
blastp_kegg lcl|cic:CICLE_v10020292mg 19 431 + 413 Gaps:6 99.05 423 68.50 0.0 hypothetical protein
blastp_kegg lcl|cit:102618802 24 431 + 408 Gaps:6 97.87 423 71.26 0.0 COBRA-like protein 4-like
blastp_kegg lcl|mdm:103455435 12 428 + 417 Gaps:6 97.02 436 67.38 0.0 COBRA-like protein 4
blastp_kegg lcl|vvi:100250060 2 418 + 417 Gaps:12 95.42 437 69.54 0.0 COBRA-like protein 4-like
blastp_uniprot_sprot sp|Q9LFW3|COBL4_ARATH 22 429 + 408 Gaps:9 95.36 431 67.15 0.0 COBRA-like protein 4 OS Arabidopsis thaliana GN COBL4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SRT7|COBL1_ARATH 12 430 + 419 Gaps:17 95.13 452 60.47 0.0 COBRA-like protein 1 OS Arabidopsis thaliana GN COBL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q10JL1|COBL5_ORYSJ 12 430 + 419 Gaps:38 97.65 468 60.18 0.0 COBRA-like protein 5 OS Oryza sativa subsp. japonica GN BC1 PE 2 SV 1
blastp_uniprot_sprot sp|A2XHZ9|COBL5_ORYSI 12 430 + 419 Gaps:38 97.65 468 60.18 0.0 COBRA-like protein 5 OS Oryza sativa subsp. indica GN BC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q60E70|COBL3_ORYSJ 20 430 + 411 Gaps:20 91.68 457 63.96 0.0 COBRA-like protein 3 OS Oryza sativa subsp. japonica GN BC1L4 PE 2 SV 1
blastp_uniprot_sprot sp|Q94KT8|COBRA_ARATH 3 410 + 408 Gaps:22 94.30 456 61.16 0.0 Protein COBRA OS Arabidopsis thaliana GN COB PE 2 SV 1
blastp_uniprot_sprot sp|Q6Z4G8|COBL1_ORYSJ 13 431 + 419 Gaps:15 94.17 446 60.71 0.0 COBRA-like protein 1 OS Oryza sativa subsp. japonica GN BC1L6 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L8Q7|COBL2_ARATH 9 429 + 421 Gaps:26 97.28 441 60.61 0.0 COBRA-like protein 2 OS Arabidopsis thaliana GN COBL2 PE 1 SV 2
blastp_uniprot_sprot sp|Q6Z4G7|COBL6_ORYSJ 22 431 + 410 Gaps:24 95.34 451 59.30 0.0 COBRA-like protein 6 OS Oryza sativa subsp. japonica GN BC1L7 PE 3 SV 1
blastp_uniprot_sprot sp|Q75IW1|COBL2_ORYSJ 10 408 + 399 Gaps:12 88.86 458 61.67 9e-180 COBRA-like protein 2 OS Oryza sativa subsp. japonica GN BC1L2 PE 2 SV 1
rpsblast_cdd gnl|CDD|191108 71 209 + 139 Gaps:4 84.62 169 62.24 2e-63 pfam04833 COBRA COBRA-like protein. Family of plant proteins are designated COBRA-like (COBL) proteins. The 12 Arabidopsis members of the family are all GPI-liked. Some members of this family are annotated as phytochelatin synthase but these annotations are incorrect.

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 431 431 PTHR31673:SF2 none none none
PANTHER 1 431 431 PTHR31673 none none none
Phobius 9 19 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 431 431 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 411 430 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PIRSF 1 431 431 PIRSF038122 none none IPR006918
Pfam 68 209 142 PF04833 none COBRA-like protein IPR006918
ProDom 19 207 189 PD140986 none PHYTOCHELATIN GLYCOPROTEIN COBRA-LIKE PRECURSOR SIGNAL MEMBRANE GPI-ANCHOR LIPOPROTEIN SYNTHETASE SYNTHETASE-LIKE IPR006918
Phobius 1 8 8 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 24 24 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 20 24 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 25 410 386 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

2 Localization

Analysis Start End Length
SignalP_EUK 1 24 23
SignalP_GRAM_NEGATIVE 1 22 21

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting