Protein : Qrob_P0542910.2 Q. robur
Protein Identifier  ? Qrob_P0542910.2 Organism . Name  Quercus robur
Score  20.0 Score Type  egn
Protein Description  (M=4) 1.4.4.2 - Glycine dehydrogenase (decarboxylating). Code Enzyme  EC:1.4.4.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 346  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0006546 glycine catabolic process The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid.
GO:0004375 glycine dehydrogenase (decarboxylating) activity Catalysis of the reaction: glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:102666149 119 328 + 210 Gaps:14 54.88 379 52.88 1e-58 F-box protein SKIP23-like
blastp_kegg lcl|pvu:PHAVU_003G267700g 127 329 + 203 Gaps:14 53.02 364 55.44 1e-56 hypothetical protein
blastp_kegg lcl|cam:101508501 132 326 + 195 Gaps:9 48.73 394 50.52 1e-51 F-box protein SKIP23-like
blastp_kegg lcl|mtr:MTR_8g074640 132 326 + 195 Gaps:9 50.93 377 50.00 5e-49 F-box protein
blastp_kegg lcl|mtr:MTR_8g074610 124 326 + 203 Gaps:15 53.40 397 44.81 1e-48 F-box family protein
blastp_kegg lcl|csv:101216539 131 327 + 197 Gaps:20 71.13 291 45.89 2e-48 putative F-box protein At1g65770-like
blastp_kegg lcl|dosa:Os01t0711400-01 31 136 + 106 none 32.92 322 77.36 4e-48 Os01g0711400 Similar to Victorin binding protein.
blastp_kegg lcl|tcc:TCM_037284 31 136 + 106 none 10.10 1050 81.13 8e-48 Glycine decarboxylase P-protein 1
blastp_kegg lcl|csv:101223483 131 327 + 197 Gaps:20 51.62 401 45.89 1e-47 putative F-box protein At1g65770-like
blastp_kegg lcl|cmo:103485361 118 327 + 210 Gaps:41 55.41 628 39.08 2e-47 F-box protein At2g17036
blastp_uniprot_sprot sp|P26969|GCSP_PEA 31 136 + 106 none 10.03 1057 79.25 2e-47 Glycine dehydrogenase (decarboxylating) mitochondrial OS Pisum sativum GN GDCSP PE 1 SV 1
blastp_uniprot_sprot sp|O80988|GCSP2_ARATH 31 136 + 106 none 10.15 1044 78.30 3e-47 Glycine dehydrogenase (decarboxylating) 2 mitochondrial OS Arabidopsis thaliana GN GLDP2 PE 1 SV 1
blastp_uniprot_sprot sp|P49361|GCSPA_FLAPR 31 136 + 106 none 10.22 1037 76.42 4e-47 Glycine dehydrogenase (decarboxylating) A mitochondrial OS Flaveria pringlei GN GDCSPA PE 2 SV 1
blastp_uniprot_sprot sp|O49852|GCSP_FLATR 31 136 + 106 none 10.25 1034 76.42 6e-47 Glycine dehydrogenase (decarboxylating) mitochondrial OS Flaveria trinervia GN GDCSPA PE 3 SV 1
blastp_uniprot_sprot sp|P49362|GCSPB_FLAPR 31 136 + 106 none 10.25 1034 76.42 6e-47 Glycine dehydrogenase (decarboxylating) B mitochondrial OS Flaveria pringlei GN GDCSPB PE 3 SV 1
blastp_uniprot_sprot sp|O49850|GCSP_FLAAN 31 136 + 106 none 10.25 1034 76.42 9e-47 Glycine dehydrogenase (decarboxylating) mitochondrial OS Flaveria anomala GN GDCSP PE 3 SV 1
blastp_uniprot_sprot sp|O49954|GCSP_SOLTU 31 136 + 106 none 10.24 1035 75.47 7e-46 Glycine dehydrogenase (decarboxylating) mitochondrial OS Solanum tuberosum GN GDCSP PE 2 SV 1
blastp_uniprot_sprot sp|Q94B78|GCSP1_ARATH 32 131 + 100 none 9.64 1037 80.00 1e-45 Glycine dehydrogenase (decarboxylating) 1 mitochondrial OS Arabidopsis thaliana GN GLDP1 PE 1 SV 2
blastp_uniprot_sprot sp|P15505|GCSP_CHICK 31 136 + 106 Gaps:3 10.26 1004 64.08 5e-33 Glycine dehydrogenase (decarboxylating) mitochondrial OS Gallus gallus GN GLDC PE 1 SV 2
blastp_uniprot_sprot sp|Q91W43|GCSP_MOUSE 31 136 + 106 Gaps:3 10.05 1025 61.17 5e-32 Glycine dehydrogenase (decarboxylating) mitochondrial OS Mus musculus GN Gldc PE 1 SV 1
rpsblast_cdd gnl|CDD|178035 31 163 + 133 Gaps:19 12.08 993 75.00 1e-53 PLN02414 PLN02414 glycine dehydrogenase (decarboxylating).
rpsblast_cdd gnl|CDD|180041 31 163 + 133 Gaps:25 11.95 954 56.14 2e-42 PRK05367 PRK05367 glycine dehydrogenase Provisional.
rpsblast_cdd gnl|CDD|129553 32 161 + 130 Gaps:18 11.93 939 53.57 1e-31 TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P H L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
rpsblast_cdd gnl|CDD|171585 32 136 + 105 Gaps:8 10.38 954 53.54 8e-27 PRK12566 PRK12566 glycine dehydrogenase Provisional.
rpsblast_cdd gnl|CDD|178754 178 326 + 149 Gaps:20 39.95 373 39.60 4e-26 PLN03215 PLN03215 ascorbic acid mannose pathway regulator 1 Provisional.
rpsblast_cdd gnl|CDD|31207 31 131 + 101 Gaps:2 20.36 496 46.53 6e-25 COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|99737 31 130 + 100 Gaps:13 27.39 398 31.19 2e-18 cd00613 GDC-P Glycine cleavage system P-protein alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P H L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein < > S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life..
rpsblast_cdd gnl|CDD|179838 31 131 + 101 Gaps:18 20.58 481 35.35 3e-15 PRK04366 PRK04366 glycine dehydrogenase subunit 2 Validated.
rpsblast_cdd gnl|CDD|202658 277 324 + 48 Gaps:5 100.00 53 39.62 7e-07 pfam03478 DUF295 Protein of unknown function (DUF295). This family of proteins are found in plants. The function of the proteins is unknown.
rpsblast_kog gnl|CDD|37251 31 136 + 106 Gaps:3 10.29 1001 68.93 1e-41 KOG2040 KOG2040 KOG2040 Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 31 131 101 PTHR11773 "KEGG:00260+1.4.4.2";signature_desc=GLYCINE DEHYDROGENASE none IPR020581
Pfam 280 324 45 PF03478 none Protein of unknown function (DUF295) IPR005174
SUPERFAMILY 32 129 98 SSF53383 none none IPR015424

1 Localization

Analysis Start End Length
TMHMM 136 158 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4

0 Targeting