Protein : Qrob_P0540280.2 Q. robur
Protein Identifier  ? Qrob_P0540280.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=44) PF00407 - Pathogenesis-related protein Bet v I family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 84  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006952 defense response Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
GO:0009607 response to biotic stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_2143600 1 82 + 82 Gaps:1 54.97 151 66.27 5e-28 Major latex protein putative
blastp_kegg lcl|rcu:RCOM_1115210 8 82 + 75 none 49.67 151 66.67 2e-26 Major latex protein putative
blastp_kegg lcl|rcu:RCOM_2010250 14 82 + 69 none 97.18 71 69.57 5e-26 hypothetical protein
blastp_kegg lcl|vvi:100255942 1 80 + 80 none 52.98 151 53.75 1e-23 MLP-like protein 28
blastp_kegg lcl|vvi:100245649 5 80 + 76 none 50.33 151 56.58 2e-23 MLP-like protein 28
blastp_kegg lcl|pper:PRUPE_ppa025363mg 7 81 + 75 none 50.00 150 58.67 3e-22 hypothetical protein
blastp_kegg lcl|pxb:103931888 5 81 + 77 none 49.68 155 58.44 5e-22 MLP-like protein 28
blastp_kegg lcl|vvi:100232890 5 80 + 76 none 50.33 151 53.95 5e-22 GRIP61 ripening-related protein-like
blastp_kegg lcl|rcu:RCOM_1115200 8 82 + 75 none 49.67 151 58.67 6e-22 Major latex protein putative
blastp_kegg lcl|pxb:103931895 5 81 + 77 none 81.91 94 55.84 4e-21 MLP-like protein 34
blastp_pdb 2i9y_A 3 83 + 81 Gaps:2 50.00 166 39.76 1e-14 mol:protein length:166 major latex protein-like protein 28 or MLP-li
blastp_uniprot_sprot sp|P85524|KIRO_ACTDE 5 79 + 75 none 50.00 150 48.00 3e-17 Kirola OS Actinidia deliciosa PE 1 SV 1
blastp_uniprot_sprot sp|Q9SSK7|MLP34_ARATH 3 80 + 78 Gaps:4 50.63 316 40.62 3e-15 MLP-like protein 34 OS Arabidopsis thaliana GN MLP34 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SSK5|MLP43_ARATH 5 80 + 76 Gaps:2 49.37 158 43.59 1e-14 MLP-like protein 43 OS Arabidopsis thaliana GN MLP43 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SSK9|MLP28_ARATH 5 80 + 76 Gaps:4 46.57 335 41.03 9e-14 MLP-like protein 28 OS Arabidopsis thaliana GN MLP28 PE 1 SV 1
blastp_uniprot_sprot sp|Q941R6|MLP31_ARATH 3 83 + 81 Gaps:2 48.54 171 39.76 1e-13 MLP-like protein 31 OS Arabidopsis thaliana GN MLP31 PE 2 SV 2
blastp_uniprot_sprot sp|Q93VR4|ML423_ARATH 2 80 + 79 none 50.97 155 34.18 6e-11 MLP-like protein 423 OS Arabidopsis thaliana GN MLP423 PE 2 SV 1
blastp_uniprot_sprot sp|Q06394|ML146_PAPSO 2 81 + 80 Gaps:2 51.57 159 32.93 3e-09 Major latex protein 146 OS Papaver somniferum GN MLP146 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C7I7|ML165_ARATH 5 80 + 76 Gaps:7 51.97 152 37.97 2e-08 MLP-like protein 165 OS Arabidopsis thaliana GN MLP165 PE 2 SV 1
blastp_uniprot_sprot sp|P19825|MLP15_PAPSO 3 81 + 79 Gaps:2 50.94 159 32.10 5e-07 Major latex protein 15 OS Papaver somniferum GN MLP15 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZVF3|ML328_ARATH 3 80 + 78 Gaps:1 52.32 151 32.91 5e-07 MLP-like protein 328 OS Arabidopsis thaliana GN MLP328 PE 2 SV 1
rpsblast_cdd gnl|CDD|198105 4 83 + 80 Gaps:1 53.64 151 50.62 2e-18 smart01037 Bet_v_1 Pathogenesis-related protein Bet v I family. This family is named after Bet v 1 the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10) cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel alder) as plant food allergens expressed in high levels in fruits vegetables and seeds (apple celery hazelnut) and as pathogenesis-related proteins whose expression is induced by pathogen infection wounding or abiotic stress. Hyp-1 an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens.
rpsblast_cdd gnl|CDD|144121 1 83 + 83 Gaps:2 56.67 150 45.88 4e-18 pfam00407 Bet_v_1 Pathogenesis-related protein Bet v I family. This family is named after Bet v 1 the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10) cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel alder) as plant food allergens expressed in high levels in fruits vegetables and seeds (apple celery hazelnut) and as pathogenesis-related proteins whose expression is induced by pathogen infection wounding or abiotic stress. Hyp-1 an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens.
rpsblast_cdd gnl|CDD|176858 2 82 + 81 Gaps:3 56.76 148 32.14 1e-11 cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa) Bet v 1 and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch Betula verrucosa) and related proteins. In addition to birch Bet v 1 this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins norcoclaurine synthases (NCSs) cytokinin binding proteins (CSBPs) major latex proteins (MLPs) and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids cytokinins flavonoids and fatty acids. Hyp-1 a PR-10 from Hypericum perforatum/St. John's wort catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear however they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup including Bet v 1 have in vitro RNase activity the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 3 81 79 SSF55961 none none none
PANTHER 3 83 81 PTHR31338 none none none
Pfam 2 82 81 PF00407 none Pathogenesis-related protein Bet v I family IPR000916
SMART 1 83 83 SM01037 none Pathogenesis-related protein Bet v I family IPR024948
Gene3D 3 83 81 G3DSA:3.30.530.20 none none IPR023393

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting