Protein : Qrob_P0538520.2 Q. robur
Protein Identifier  ? Qrob_P0538520.2 Organism . Name  Quercus robur
Score  78.0 Score Type  egn
Protein Description  (M=1) K08740 - DNA mismatch repair protein MSH4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 781  
Kegg Orthology  K08740
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006298 mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa001614mg 1 780 + 780 Gaps:12 100.00 792 89.14 0.0 hypothetical protein
blastp_kegg lcl|pmum:103337071 1 780 + 780 Gaps:12 100.00 792 88.64 0.0 DNA mismatch repair protein MSH4
blastp_kegg lcl|pxb:103927347 1 780 + 780 Gaps:12 100.00 792 88.38 0.0 DNA mismatch repair protein MSH4-like
blastp_kegg lcl|tcc:TCM_047017 1 780 + 780 Gaps:12 100.00 792 88.76 0.0 MUTS-like protein 4
blastp_kegg lcl|fve:101296577 1 780 + 780 Gaps:12 100.00 792 88.64 0.0 DNA mismatch repair protein MSH4-like
blastp_kegg lcl|pxb:103927334 1 780 + 780 Gaps:26 100.00 806 86.97 0.0 DNA mismatch repair protein MSH4-like
blastp_kegg lcl|cic:CICLE_v10018920mg 1 780 + 780 Gaps:12 100.00 792 87.37 0.0 hypothetical protein
blastp_kegg lcl|cit:102623441 1 780 + 780 Gaps:12 100.00 792 87.12 0.0 DNA mismatch repair protein MSH4-like
blastp_kegg lcl|cmo:103482597 1 780 + 780 Gaps:15 100.00 789 87.07 0.0 DNA mismatch repair protein MSH4
blastp_kegg lcl|sot:102599967 1 780 + 780 Gaps:12 100.00 792 83.59 0.0 DNA mismatch repair protein MSH4-like
blastp_pdb 1wb9_B 140 717 + 578 Gaps:71 67.12 800 34.45 4e-59 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1wb9_A 140 717 + 578 Gaps:71 67.12 800 34.45 4e-59 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 2wtu_B 140 717 + 578 Gaps:71 67.12 800 34.45 4e-59 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 2wtu_A 140 717 + 578 Gaps:71 67.12 800 34.45 4e-59 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1w7a_B 140 717 + 578 Gaps:71 67.12 800 34.45 4e-59 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1w7a_A 140 717 + 578 Gaps:71 67.12 800 34.45 4e-59 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1oh8_B 140 717 + 578 Gaps:71 67.12 800 34.45 4e-59 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1oh8_A 140 717 + 578 Gaps:71 67.12 800 34.45 4e-59 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1oh7_B 140 717 + 578 Gaps:71 67.12 800 34.45 4e-59 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1oh7_A 140 717 + 578 Gaps:71 67.12 800 34.45 4e-59 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_uniprot_sprot sp|F4JP48|MSH4_ARATH 1 780 + 780 Gaps:12 100.00 792 82.07 0.0 DNA mismatch repair protein MSH4 OS Arabidopsis thaliana GN MSH4 PE 2 SV 1
blastp_uniprot_sprot sp|O15457|MSH4_HUMAN 11 775 + 765 Gaps:52 81.73 936 37.25 5e-147 MutS protein homolog 4 OS Homo sapiens GN MSH4 PE 1 SV 2
blastp_uniprot_sprot sp|Q99MT2|MSH4_MOUSE 10 775 + 766 Gaps:52 79.96 958 36.29 1e-136 MutS protein homolog 4 OS Mus musculus GN Msh4 PE 2 SV 1
blastp_uniprot_sprot sp|P40965|MSH4_YEAST 23 700 + 678 Gaps:82 76.77 878 31.16 1e-74 MutS protein homolog 4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN MSH4 PE 1 SV 2
blastp_uniprot_sprot sp|B0VUC9|MUTS_ACIBS 144 730 + 587 Gaps:74 62.32 881 34.61 3e-73 DNA mismatch repair protein MutS OS Acinetobacter baumannii (strain SDF) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|C5BMR5|MUTS_TERTT 118 723 + 606 Gaps:56 64.81 864 33.57 3e-73 DNA mismatch repair protein MutS OS Teredinibacter turnerae (strain ATCC 39867 / T7901) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|B0VAU7|MUTS_ACIBY 144 730 + 587 Gaps:74 62.32 881 34.61 4e-73 DNA mismatch repair protein MutS OS Acinetobacter baumannii (strain AYE) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|B2HX50|MUTS_ACIBC 144 730 + 587 Gaps:74 62.32 881 34.61 4e-73 DNA mismatch repair protein MutS OS Acinetobacter baumannii (strain ACICU) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|B7IBV9|MUTS_ACIB5 144 730 + 587 Gaps:74 62.32 881 34.61 4e-73 DNA mismatch repair protein MutS OS Acinetobacter baumannii (strain AB0057) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|B7GW85|MUTS_ACIB3 144 730 + 587 Gaps:74 62.32 881 34.61 4e-73 DNA mismatch repair protein MutS OS Acinetobacter baumannii (strain AB307-0294) GN mutS PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PIRSF 3 778 776 PIRSF005813 none none IPR011184
Gene3D 495 723 229 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 495 723 229 SSF52540 none none IPR027417
SMART 534 721 188 SM00534 none ATPase domain of DNA mismatch repair MUTS family IPR000432
Pfam 351 440 90 PF05190 none MutS family domain IV IPR007861
Pfam 159 480 322 PF05192 none MutS domain III IPR007696
SMART 178 519 342 SM00533 none DNA-binding domain of DNA mismatch repair MUTS family IPR007696
SUPERFAMILY 156 484 329 SSF48334 none none IPR007696
Gene3D 152 391 240 G3DSA:1.10.1420.10 none none none
PANTHER 1 775 775 PTHR11361 none none none
Pfam 495 725 231 PF00488 none MutS domain V IPR000432
PANTHER 1 775 775 PTHR11361:SF21 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting