Protein : Qrob_P0536670.2 Q. robur
Protein Identifier  ? Qrob_P0536670.2 Organism . Name  Quercus robur
Score  44.3 Score Type  egn
Protein Description  (M=3) PTHR23079:SF5 - RNA-DEPENDENT RNA POLYMERASE 2 (PTHR23079:SF5) Code Enzyme  EC:2.7.7.48
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1173  
Kegg Orthology  K11699
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0003968 RNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_012022 7 1166 + 1160 Gaps:60 96.95 1149 72.17 0.0 RNA-dependent RNA polymerase 2 isoform 1
blastp_kegg lcl|cit:102611197 10 1165 + 1156 Gaps:75 99.65 1131 70.63 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|pmum:103338320 3 1167 + 1165 Gaps:71 100.00 1100 72.00 0.0 RNA-dependent RNA polymerase 2
blastp_kegg lcl|vvi:100260325 3 1171 + 1169 Gaps:60 99.47 1127 69.49 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|cmo:103493922 7 1164 + 1158 Gaps:60 99.37 1117 70.00 0.0 RNA-dependent RNA polymerase 2
blastp_kegg lcl|fve:101296862 7 1172 + 1166 Gaps:60 98.42 1136 69.59 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|pop:POPTR_0015s08500g 4 1163 + 1160 Gaps:68 99.64 1110 71.61 0.0 POPTRDRAFT_575133 hypothetical protein
blastp_kegg lcl|cam:101489233 1 1163 + 1163 Gaps:62 99.73 1122 70.87 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|gmx:100808274 10 1161 + 1152 Gaps:65 98.57 1121 69.59 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|mtr:MTR_4g106660 1 1161 + 1161 Gaps:63 93.58 1308 69.28 0.0 Rna-dependent RNA polymerase
blastp_pdb 2j7o_A 594 887 + 294 Gaps:47 31.02 1022 25.87 5e-15 mol:protein length:1022 RNA DEPENDENT RNA POLYMERASE
blastp_pdb 2j7n_B 594 887 + 294 Gaps:47 31.02 1022 25.87 5e-15 mol:protein length:1022 RNA-DEPENDENT RNA POLYMERASE
blastp_pdb 2j7n_A 594 887 + 294 Gaps:47 31.02 1022 25.87 5e-15 mol:protein length:1022 RNA-DEPENDENT RNA POLYMERASE
blastp_uniprot_sprot sp|O82504|RDR2_ARATH 1 1168 + 1168 Gaps:65 99.12 1133 63.58 0.0 RNA-dependent RNA polymerase 2 OS Arabidopsis thaliana GN RDR2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7XM31|RDR2_ORYSJ 13 1170 + 1158 Gaps:72 97.71 1136 51.80 0.0 Probable RNA-dependent RNA polymerase 2 OS Oryza sativa subsp. japonica GN RDR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LQV2|RDR1_ARATH 226 1172 + 947 Gaps:62 84.46 1107 45.99 0.0 RNA-dependent RNA polymerase 1 OS Arabidopsis thaliana GN RDR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DXS3|RDR1_ORYSJ 431 1158 + 728 Gaps:43 96.35 740 49.37 0.0 Probable RNA-dependent RNA polymerase 1 OS Oryza sativa subsp. japonica GN RDR1 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LHH9|SHL2_ORYSJ 265 1168 + 904 Gaps:79 76.60 1218 37.51 2e-170 Probable RNA-dependent RNA polymerase SHL2 OS Oryza sativa subsp. japonica GN SHL2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SG02|RDR6_ARATH 11 1158 + 1148 Gaps:140 96.66 1196 33.39 2e-161 RNA-dependent RNA polymerase 6 OS Arabidopsis thaliana GN RDR6 PE 1 SV 1
blastp_uniprot_sprot sp|O14227|RDR1_SCHPO 363 1157 + 795 Gaps:76 66.75 1215 31.07 7e-92 RNA-dependent RNA polymerase 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rdr1 PE 1 SV 1
blastp_uniprot_sprot sp|O82188|RDR5_ARATH 499 1071 + 573 Gaps:118 63.97 977 27.68 1e-29 Probable RNA-dependent RNA polymerase 5 OS Arabidopsis thaliana GN RDR5 PE 2 SV 2
blastp_uniprot_sprot sp|O82189|RDR4_ARATH 493 1003 + 511 Gaps:111 60.84 927 26.60 1e-24 Probable RNA-dependent RNA polymerase 4 OS Arabidopsis thaliana GN RDR4 PE 3 SV 2
blastp_uniprot_sprot sp|O82190|RDR3_ARATH 473 1015 + 543 Gaps:124 61.39 992 25.94 2e-24 Probable RNA-dependent RNA polymerase 3 OS Arabidopsis thaliana GN RDR3 PE 3 SV 2
rpsblast_cdd gnl|CDD|203192 431 1003 + 573 Gaps:92 97.44 508 44.44 1e-127 pfam05183 RdRP RNA dependent RNA polymerase. This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
rpsblast_kog gnl|CDD|36206 10 1169 + 1160 Gaps:139 98.08 1145 35.08 0.0 KOG0988 KOG0988 KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 432 1010 579 PF05183 none RNA dependent RNA polymerase IPR007855
PANTHER 226 1166 941 PTHR23079:SF5 none none none
SUPERFAMILY 8 71 64 SSF54928 none none none
Gene3D 10 82 73 G3DSA:3.30.70.330 none none IPR012677
PANTHER 226 1166 941 PTHR23079 none none IPR007855
ProSiteProfiles 9 88 80 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting