Protein : Qrob_P0536390.2 Q. robur
Protein Identifier  ? Qrob_P0536390.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) K14376 - poly(A) polymerase [EC:2.7.7.19] Code Enzyme  EC:2.7.7.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 423  
Kegg Orthology  K14376
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0016779 nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.
GO:0004652 polynucleotide adenylyltransferase activity Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group.
GO:0043631 RNA polyadenylation The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule.
GO:0031123 RNA 3'-end processing Any process involved in forming the mature 3' end of an RNA molecule.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100252483 16 421 + 406 none 69.17 587 72.91 0.0 poly(A) polymerase-like
blastp_kegg lcl|sot:102594846 17 421 + 405 Gaps:1 58.13 695 70.54 0.0 poly(A) polymerase-like
blastp_kegg lcl|rcu:RCOM_0723820 15 421 + 407 none 52.86 770 70.76 0.0 Poly(A) polymerase alpha putative (EC:2.7.7.19)
blastp_kegg lcl|pper:PRUPE_ppa001856mg 15 421 + 407 none 53.91 755 70.52 0.0 hypothetical protein
blastp_kegg lcl|gmx:100816915 1 422 + 422 none 55.75 757 68.01 0.0 poly(A) polymerase-like
blastp_kegg lcl|sly:101266027 17 421 + 405 Gaps:1 59.24 682 70.05 0.0 poly(A) polymerase-like
blastp_kegg lcl|atr:s00044p00207970 16 422 + 407 none 62.71 649 70.27 0.0 AMTR_s00044p00207970 hypothetical protein
blastp_kegg lcl|mus:103974220 16 421 + 406 none 52.52 773 70.20 0.0 poly(A) polymerase PAPalpha isoform X1
blastp_kegg lcl|pmum:103338749 15 421 + 407 none 53.91 755 70.27 0.0 poly(A) polymerase pla1
blastp_kegg lcl|tcc:TCM_012521 15 421 + 407 none 53.41 762 69.53 0.0 Poly(A) polymerase 1 isoform 1
blastp_pdb 1f5a_A 12 422 + 411 Gaps:6 80.90 513 47.23 8e-122 mol:protein length:513 POLY(A) POLYMERASE
blastp_pdb 1q79_A 12 422 + 411 Gaps:6 80.74 514 47.23 8e-122 mol:protein length:514 Poly(A) polymerase alpha
blastp_pdb 1q78_A 12 422 + 411 Gaps:6 80.74 514 47.23 8e-122 mol:protein length:514 Poly(A) polymerase alpha
blastp_pdb 2hhp_A 24 414 + 391 Gaps:7 72.83 530 44.56 3e-107 mol:protein length:530 Poly(A) polymerase
blastp_pdb 3c66_B 24 414 + 391 Gaps:7 71.88 537 44.56 4e-107 mol:protein length:537 Poly(A) polymerase
blastp_pdb 3c66_A 24 414 + 391 Gaps:7 71.88 537 44.56 4e-107 mol:protein length:537 Poly(A) polymerase
blastp_pdb 1fa0_B 24 414 + 391 Gaps:7 71.88 537 44.56 4e-107 mol:protein length:537 POLY(A)-POLYMERASE
blastp_pdb 1fa0_A 24 414 + 391 Gaps:7 71.88 537 44.56 4e-107 mol:protein length:537 POLY(A)-POLYMERASE
blastp_pdb 2o1p_B 24 414 + 391 Gaps:7 70.70 546 44.56 4e-107 mol:protein length:546 Poly(A) polymerase
blastp_pdb 2o1p_A 24 414 + 391 Gaps:7 70.70 546 44.56 4e-107 mol:protein length:546 Poly(A) polymerase
blastp_uniprot_sprot sp|Q54J73|PAP_DICDI 13 422 + 410 Gaps:7 50.31 809 49.63 5e-135 Poly(A) polymerase OS Dictyostelium discoideum GN papA PE 3 SV 1
blastp_uniprot_sprot sp|Q61183|PAPOA_MOUSE 12 421 + 410 Gaps:7 56.16 739 47.71 2e-119 Poly(A) polymerase alpha OS Mus musculus GN Papola PE 1 SV 4
blastp_uniprot_sprot sp|P25500|PAPOA_BOVIN 12 421 + 410 Gaps:6 56.02 739 47.34 5e-119 Poly(A) polymerase alpha OS Bos taurus GN PAPOLA PE 1 SV 3
blastp_uniprot_sprot sp|P51003|PAPOA_HUMAN 12 421 + 410 Gaps:6 55.57 745 47.34 5e-119 Poly(A) polymerase alpha OS Homo sapiens GN PAPOLA PE 1 SV 4
blastp_uniprot_sprot sp|Q9BWT3|PAPOG_HUMAN 17 405 + 389 Gaps:1 52.72 736 47.16 8e-119 Poly(A) polymerase gamma OS Homo sapiens GN PAPOLG PE 1 SV 2
blastp_uniprot_sprot sp|Q9WVP6|PAPOB_MOUSE 8 421 + 414 Gaps:7 65.37 641 46.30 4e-118 Poly(A) polymerase beta OS Mus musculus GN Papolb PE 1 SV 2
blastp_uniprot_sprot sp|Q10295|PAP_SCHPO 17 403 + 387 Gaps:1 68.20 566 46.11 6e-118 Poly(A) polymerase pla1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN pla1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6PCL9|PAPOG_MOUSE 17 405 + 389 Gaps:1 52.50 739 46.91 7e-118 Poly(A) polymerase gamma OS Mus musculus GN Papolg PE 1 SV 1
blastp_uniprot_sprot sp|Q9NRJ5|PAPOB_HUMAN 15 421 + 407 Gaps:6 64.62 636 47.45 3e-117 Poly(A) polymerase beta OS Homo sapiens GN PAPOLB PE 2 SV 1
blastp_uniprot_sprot sp|P51004|PAPO1_XENLA 13 405 + 393 Gaps:3 54.55 715 46.67 3e-113 Poly(A) polymerase alpha-A (Fragment) OS Xenopus laevis GN papola-a PE 2 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 364 417 54 PF04926 none Poly(A) polymerase predicted RNA binding domain IPR007010
SUPERFAMILY 364 418 55 SSF55003 none none IPR011068
PIRSF 8 421 414 PIRSF018425 none none IPR014492
Gene3D 157 361 205 G3DSA:1.10.1410.10 none none none
Pfam 15 361 347 PF04928 none Poly(A) polymerase central domain IPR007012
PANTHER 12 418 407 PTHR10682:SF22 none none none
PANTHER 12 418 407 PTHR10682 none none IPR014492
Pfam 90 166 77 PF01909 none Nucleotidyltransferase domain IPR002934
SUPERFAMILY 212 360 149 SSF81631 none none none
SUPERFAMILY 17 209 193 SSF81301 none none none
Gene3D 364 418 55 G3DSA:3.30.70.590 none none IPR007010

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting