Protein : Qrob_P0536370.2 Q. robur
Protein Identifier  ? Qrob_P0536370.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) K14376 - poly(A) polymerase [EC:2.7.7.19] Code Enzyme  EC:2.7.7.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 703  
Kegg Orthology  K14376
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0016779 nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.
GO:0004652 polynucleotide adenylyltransferase activity Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group.
GO:0043631 RNA polyadenylation The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule.
GO:0031123 RNA 3'-end processing Any process involved in forming the mature 3' end of an RNA molecule.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100252483 16 557 + 542 Gaps:1 92.16 587 65.99 0.0 poly(A) polymerase-like
blastp_kegg lcl|mtr:MTR_6g082000 1 700 + 700 Gaps:49 99.34 752 52.88 0.0 Poly(A) polymerase
blastp_kegg lcl|vvi:100268087 15 700 + 686 Gaps:58 97.49 757 54.07 0.0 poly(A) polymerase-like
blastp_kegg lcl|tcc:TCM_012521 15 701 + 687 Gaps:64 97.77 762 53.15 0.0 Poly(A) polymerase 1 isoform 1
blastp_kegg lcl|cam:101514104 16 700 + 685 Gaps:54 97.34 753 52.39 0.0 poly(A) polymerase-like
blastp_kegg lcl|rcu:RCOM_0723820 15 691 + 677 Gaps:57 95.06 770 53.96 0.0 Poly(A) polymerase alpha putative (EC:2.7.7.19)
blastp_kegg lcl|pper:PRUPE_ppa001856mg 15 701 + 687 Gaps:55 97.75 755 53.39 0.0 hypothetical protein
blastp_kegg lcl|gmx:100816915 1 700 + 700 Gaps:56 99.34 757 51.99 0.0 poly(A) polymerase-like
blastp_kegg lcl|cit:102606839 15 700 + 686 Gaps:58 98.93 748 53.11 0.0 poly(A) polymerase-like
blastp_kegg lcl|pop:POPTR_0015s04100g 15 700 + 686 Gaps:72 97.18 780 51.98 0.0 POPTRDRAFT_251405 hypothetical protein
blastp_pdb 1f5a_A 8 461 + 454 Gaps:8 88.89 513 45.39 6e-121 mol:protein length:513 POLY(A) POLYMERASE
blastp_pdb 1q79_A 8 461 + 454 Gaps:8 88.72 514 45.39 6e-121 mol:protein length:514 Poly(A) polymerase alpha
blastp_pdb 1q78_A 8 461 + 454 Gaps:8 88.72 514 45.39 6e-121 mol:protein length:514 Poly(A) polymerase alpha
blastp_pdb 2hhp_A 17 414 + 398 Gaps:11 74.91 530 44.58 6e-105 mol:protein length:530 Poly(A) polymerase
blastp_pdb 3c66_B 17 414 + 398 Gaps:11 73.93 537 44.58 6e-105 mol:protein length:537 Poly(A) polymerase
blastp_pdb 3c66_A 17 414 + 398 Gaps:11 73.93 537 44.58 6e-105 mol:protein length:537 Poly(A) polymerase
blastp_pdb 1fa0_B 17 414 + 398 Gaps:11 73.93 537 44.58 6e-105 mol:protein length:537 POLY(A)-POLYMERASE
blastp_pdb 1fa0_A 17 414 + 398 Gaps:11 73.93 537 44.58 6e-105 mol:protein length:537 POLY(A)-POLYMERASE
blastp_pdb 2o1p_B 17 414 + 398 Gaps:11 72.71 546 44.58 9e-105 mol:protein length:546 Poly(A) polymerase
blastp_pdb 2o1p_A 17 414 + 398 Gaps:11 72.71 546 44.58 9e-105 mol:protein length:546 Poly(A) polymerase
blastp_uniprot_sprot sp|Q54J73|PAP_DICDI 13 509 + 497 Gaps:18 61.93 809 45.51 2e-139 Poly(A) polymerase OS Dictyostelium discoideum GN papA PE 3 SV 1
blastp_uniprot_sprot sp|P51003|PAPOA_HUMAN 8 479 + 472 Gaps:12 64.16 745 44.14 1e-119 Poly(A) polymerase alpha OS Homo sapiens GN PAPOLA PE 1 SV 4
blastp_uniprot_sprot sp|Q9BWT3|PAPOG_HUMAN 17 610 + 594 Gaps:25 79.48 736 38.29 1e-119 Poly(A) polymerase gamma OS Homo sapiens GN PAPOLG PE 1 SV 2
blastp_uniprot_sprot sp|P25500|PAPOA_BOVIN 8 479 + 472 Gaps:12 64.68 739 44.14 2e-119 Poly(A) polymerase alpha OS Bos taurus GN PAPOLA PE 1 SV 3
blastp_uniprot_sprot sp|Q61183|PAPOA_MOUSE 8 479 + 472 Gaps:12 64.68 739 43.93 2e-119 Poly(A) polymerase alpha OS Mus musculus GN Papola PE 1 SV 4
blastp_uniprot_sprot sp|Q6PCL9|PAPOG_MOUSE 17 610 + 594 Gaps:24 79.57 739 38.61 8e-118 Poly(A) polymerase gamma OS Mus musculus GN Papolg PE 1 SV 1
blastp_uniprot_sprot sp|Q10295|PAP_SCHPO 17 403 + 387 Gaps:1 68.20 566 47.41 5e-117 Poly(A) polymerase pla1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN pla1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9WVP6|PAPOB_MOUSE 8 461 + 454 Gaps:10 71.14 641 44.52 2e-116 Poly(A) polymerase beta OS Mus musculus GN Papolb PE 1 SV 2
blastp_uniprot_sprot sp|Q9NRJ5|PAPOB_HUMAN 15 479 + 465 Gaps:14 74.06 636 44.16 5e-115 Poly(A) polymerase beta OS Homo sapiens GN PAPOLB PE 2 SV 1
blastp_uniprot_sprot sp|P51004|PAPO1_XENLA 13 499 + 487 Gaps:15 68.53 715 41.63 4e-113 Poly(A) polymerase alpha-A (Fragment) OS Xenopus laevis GN papola-a PE 2 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 212 360 149 SSF81631 none none none
PANTHER 12 538 527 PTHR10682 none none IPR014492
Gene3D 364 476 113 G3DSA:3.30.70.590 none none IPR007010
SUPERFAMILY 17 207 191 SSF81301 none none none
Gene3D 157 361 205 G3DSA:1.10.1410.10 none none none
Pfam 364 495 132 PF04926 none Poly(A) polymerase predicted RNA binding domain IPR007010
SUPERFAMILY 364 488 125 SSF55003 none none IPR011068
Pfam 15 361 347 PF04928 none Poly(A) polymerase central domain IPR007012
PANTHER 12 538 527 PTHR10682:SF22 none none none
Pfam 83 164 82 PF01909 none Nucleotidyltransferase domain IPR002934

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting