Protein : Qrob_P0536130.2 Q. robur
Protein Identifier  ? Qrob_P0536130.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=6) PTHR10217//PTHR10217:SF486 - VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 436  
Kegg Orthology  K05391
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102621236 5 434 + 430 Gaps:12 61.69 697 70.00 0.0 putative cyclic nucleotide-gated ion channel 15-like
blastp_kegg lcl|cic:CICLE_v10027932mg 5 434 + 430 Gaps:12 61.69 697 69.77 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_042082 5 434 + 430 Gaps:16 61.30 708 70.51 0.0 Cyclic nucleotide-gated channel 15
blastp_kegg lcl|pper:PRUPE_ppa002211mg 5 434 + 430 Gaps:13 61.57 700 69.84 0.0 hypothetical protein
blastp_kegg lcl|cit:102631299 3 434 + 432 Gaps:10 61.95 707 68.04 0.0 putative cyclic nucleotide-gated ion channel 15-like
blastp_kegg lcl|gmx:100786868 5 434 + 430 Gaps:17 61.13 692 70.69 0.0 putative cyclic nucleotide-gated ion channel 15-like
blastp_kegg lcl|csv:101231485 5 434 + 430 Gaps:7 59.58 720 68.30 0.0 putative cyclic nucleotide-gated ion channel 15-like
blastp_kegg lcl|csv:101210775 5 434 + 430 Gaps:7 59.58 720 68.30 0.0 putative cyclic nucleotide-gated ion channel 15-like
blastp_kegg lcl|cmo:103501958 5 434 + 430 Gaps:29 59.34 723 68.76 0.0 putative cyclic nucleotide-gated ion channel 15
blastp_kegg lcl|mdm:103407781 5 434 + 430 Gaps:19 61.57 700 69.61 0.0 putative cyclic nucleotide-gated ion channel 15
blastp_pdb 1wgp_A 215 340 + 126 none 91.97 137 73.02 3e-59 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_pdb 3u0z_B 160 278 + 119 Gaps:9 60.00 210 32.54 1e-10 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 3u0z_A 160 278 + 119 Gaps:9 60.00 210 32.54 1e-10 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ukv_D 156 362 + 207 Gaps:29 83.96 212 29.21 2e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukv_C 156 362 + 207 Gaps:29 83.96 212 29.21 2e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukv_A 156 362 + 207 Gaps:29 83.96 212 29.21 2e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukv_B 156 362 + 207 Gaps:29 83.96 212 29.21 2e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukt_D 156 362 + 207 Gaps:29 83.96 212 29.21 2e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukt_C 156 362 + 207 Gaps:29 83.96 212 29.21 2e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_pdb 3ukt_A 156 362 + 207 Gaps:29 83.96 212 29.21 2e-10 mol:protein length:212 Novel protein similar to vertebrate potassium
blastp_uniprot_sprot sp|Q9SL29|CNG15_ARATH 5 435 + 431 Gaps:13 61.95 678 69.05 0.0 Putative cyclic nucleotide-gated ion channel 15 OS Arabidopsis thaliana GN CNGC15 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SJA4|CNG14_ARATH 5 386 + 382 Gaps:10 52.62 726 63.61 3e-169 Probable cyclic nucleotide-gated ion channel 14 OS Arabidopsis thaliana GN CNGC14 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 3 434 + 432 Gaps:19 59.62 733 57.67 6e-167 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 3 435 + 433 Gaps:37 62.06 738 55.02 2e-165 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1
blastp_uniprot_sprot sp|Q8L7Z0|CNG17_ARATH 5 374 + 370 Gaps:7 51.25 720 62.06 2e-165 Probable cyclic nucleotide-gated ion channel 17 OS Arabidopsis thaliana GN CNGC17 PE 2 SV 1
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 3 434 + 432 Gaps:26 60.51 747 56.19 2e-165 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 3 378 + 376 Gaps:3 52.86 717 60.16 1e-163 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 3 381 + 379 Gaps:10 51.13 753 61.04 6e-163 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SU64|CNG16_ARATH 5 376 + 372 Gaps:7 53.48 705 59.95 3e-160 Probable cyclic nucleotide-gated ion channel 16 OS Arabidopsis thaliana GN CNGC16 PE 2 SV 1
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 5 435 + 431 Gaps:27 61.45 716 54.09 4e-156 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 86 182 97 SSF81324 none none none
Pfam 46 139 94 PF00520 none Ion transport protein IPR005821
ProSiteProfiles 222 318 97 PS50042 none cAMP/cGMP binding motif profile. IPR000595
PANTHER 5 25 21 PTHR10217 none none none
PANTHER 82 414 333 PTHR10217 none none none
SUPERFAMILY 153 346 194 SSF51206 none none IPR018490
Gene3D 220 338 119 G3DSA:2.60.120.10 none none IPR014710
Gene3D 85 144 60 G3DSA:1.10.287.70 none none none
SMART 222 353 132 SM00100 none Cyclic nucleotide-monophosphate binding domain IPR000595
Phobius 137 435 299 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 117 117 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 118 136 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 82 414 333 PTHR10217:SF486 none none none
Gene3D 159 213 55 G3DSA:1.10.287.630 none none none
Pfam 247 338 92 PF00027 none Cyclic nucleotide-binding domain IPR000595
PANTHER 5 25 21 PTHR10217:SF486 none none none

2 Localization

Analysis Start End Length
TMHMM 77 99 22
TMHMM 114 136 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting