Protein : Qrob_P0536110.2 Q. robur
Protein Identifier  ? Qrob_P0536110.2 Organism . Name  Quercus robur
Score  95.1 Score Type  egn
Protein Description  (M=6) PTHR10217//PTHR10217:SF486 - VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 696  
Kegg Orthology  K05391
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006813 potassium ion transport The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0005249 voltage-gated potassium channel activity Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa002211mg 1 695 + 695 Gaps:12 99.86 700 74.82 0.0 hypothetical protein
blastp_kegg lcl|cit:102621236 1 695 + 695 Gaps:19 99.86 697 75.72 0.0 putative cyclic nucleotide-gated ion channel 15-like
blastp_kegg lcl|cic:CICLE_v10027932mg 1 695 + 695 Gaps:19 99.86 697 75.43 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_042082 1 695 + 695 Gaps:12 99.86 708 73.55 0.0 Cyclic nucleotide-gated channel 15
blastp_kegg lcl|pmum:103325529 1 695 + 695 Gaps:12 99.86 700 74.82 0.0 putative cyclic nucleotide-gated ion channel 15
blastp_kegg lcl|fve:101293846 1 695 + 695 Gaps:8 99.86 704 73.26 0.0 putative cyclic nucleotide-gated ion channel 15-like
blastp_kegg lcl|mdm:103407781 1 695 + 695 Gaps:12 99.86 700 73.39 0.0 putative cyclic nucleotide-gated ion channel 15
blastp_kegg lcl|pxb:103962021 1 695 + 695 Gaps:18 99.86 694 74.03 0.0 putative cyclic nucleotide-gated ion channel 15
blastp_kegg lcl|mdm:103447897 1 695 + 695 Gaps:18 99.86 694 74.60 0.0 putative cyclic nucleotide-gated ion channel 15
blastp_kegg lcl|pxb:103956749 1 695 + 695 Gaps:12 99.86 700 73.68 0.0 putative cyclic nucleotide-gated ion channel 15
blastp_pdb 1wgp_A 472 595 + 124 none 90.51 137 66.94 2e-52 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_pdb 1q5o_A 407 548 + 142 Gaps:7 65.22 207 28.15 2e-10 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q43_B 407 548 + 142 Gaps:7 65.22 207 28.15 2e-10 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q43_A 407 548 + 142 Gaps:7 65.22 207 28.15 2e-10 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q3e_B 407 548 + 142 Gaps:7 65.22 207 28.15 2e-10 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q3e_A 407 548 + 142 Gaps:7 65.22 207 28.15 2e-10 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 3u10_A 407 548 + 142 Gaps:7 64.29 210 28.15 2e-10 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ffq_B 407 548 + 142 Gaps:7 66.83 202 28.15 2e-10 mol:protein length:202 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ffq_A 407 548 + 142 Gaps:7 66.83 202 28.15 2e-10 mol:protein length:202 Potassium/sodium hyperpolarization-activated
blastp_pdb 2q0a_B 407 548 + 142 Gaps:7 67.50 200 28.15 2e-10 mol:protein length:200 Potassium/sodium hyperpolarization-activated
blastp_uniprot_sprot sp|Q9SL29|CNG15_ARATH 1 694 + 694 Gaps:20 100.00 678 71.98 0.0 Putative cyclic nucleotide-gated ion channel 15 OS Arabidopsis thaliana GN CNGC15 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SJA4|CNG14_ARATH 1 695 + 695 Gaps:45 100.00 726 50.96 0.0 Probable cyclic nucleotide-gated ion channel 14 OS Arabidopsis thaliana GN CNGC14 PE 2 SV 2
blastp_uniprot_sprot sp|Q8L7Z0|CNG17_ARATH 1 695 + 695 Gaps:33 99.72 720 49.30 0.0 Probable cyclic nucleotide-gated ion channel 17 OS Arabidopsis thaliana GN CNGC17 PE 2 SV 1
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 1 695 + 695 Gaps:37 100.00 716 51.26 0.0 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 62 695 + 634 Gaps:11 87.45 733 52.73 0.0 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 62 695 + 634 Gaps:28 87.82 747 51.07 0.0 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LEQ3|CNG18_ARATH 73 695 + 623 Gaps:42 94.19 706 48.87 0.0 Putative cyclic nucleotide-gated ion channel 18 OS Arabidopsis thaliana GN CNGC18 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SU64|CNG16_ARATH 67 636 + 570 Gaps:14 82.27 705 54.48 0.0 Probable cyclic nucleotide-gated ion channel 16 OS Arabidopsis thaliana GN CNGC16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 58 694 + 637 Gaps:34 90.11 738 50.08 0.0 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 38 691 + 654 Gaps:34 90.84 753 48.83 0.0 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2

34 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 257 267 11 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
PRINTS 346 363 18 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
PRINTS 372 383 12 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
PRINTS 390 399 10 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
PRINTS 440 447 8 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
PRINTS 140 149 10 PR01463 none EAG/ELK/ERG potassium channel family signature IPR003938
Gene3D 475 594 120 G3DSA:2.60.120.10 none none IPR014710
Gene3D 85 273 189 G3DSA:1.10.287.70 none none none
Gene3D 339 399 61 G3DSA:1.10.287.70 none none none
Phobius 392 695 304 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 216 236 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 248 269 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 88 109 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 499 593 95 PF00027 none Cyclic nucleotide-binding domain IPR000595
Phobius 1 87 87 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 237 247 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 328 646 319 PTHR10217 none none none
Phobius 177 196 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 373 391 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 477 573 97 PS50042 none cAMP/cGMP binding motif profile. IPR000595
SUPERFAMILY 76 274 199 SSF81324 none none none
SUPERFAMILY 339 399 61 SSF81324 none none none
Phobius 197 215 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 139 176 38 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 400 468 69 G3DSA:1.10.287.630 none none none
Phobius 110 114 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 115 138 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SMART 477 608 132 SM00100 none Cyclic nucleotide-monophosphate binding domain IPR000595
SUPERFAMILY 407 603 197 SSF51206 none none IPR018490
PANTHER 52 278 227 PTHR10217 none none none

6 Localization

Analysis Start End Length
TMHMM 332 354 22
TMHMM 177 199 22
TMHMM 88 110 22
TMHMM 211 233 22
TMHMM 248 270 22
TMHMM 369 391 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting