2 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0016192 | vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
| GO:0006904 | vesicle docking involved in exocytosis | The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis. |
12 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|vvi:100262654 | 6 | 857 | + | 852 | Gaps:2 | 98.27 | 869 | 78.10 | 0.0 | uncharacterized LOC100262654 |
| blastp_kegg | lcl|pmum:103328317 | 5 | 857 | + | 853 | Gaps:2 | 98.39 | 869 | 77.66 | 0.0 | uncharacterized LOC103328317 |
| blastp_kegg | lcl|pper:PRUPE_ppa001258mg | 5 | 857 | + | 853 | Gaps:2 | 98.39 | 869 | 77.19 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|tcc:TCM_001734 | 5 | 857 | + | 853 | Gaps:3 | 98.38 | 864 | 75.76 | 0.0 | Vesicle docking involved in exocytosis isoform 1 |
| blastp_kegg | lcl|mdm:103444073 | 5 | 857 | + | 853 | Gaps:20 | 98.35 | 851 | 76.70 | 0.0 | uncharacterized LOC103444073 |
| blastp_kegg | lcl|fve:101310332 | 5 | 857 | + | 853 | Gaps:9 | 98.37 | 860 | 74.35 | 0.0 | uncharacterized protein LOC101310332 |
| blastp_kegg | lcl|cam:101505576 | 2 | 857 | + | 856 | Gaps:9 | 98.49 | 860 | 74.38 | 0.0 | uncharacterized LOC101505576 |
| blastp_kegg | lcl|cic:CICLE_v10014241mg | 6 | 857 | + | 852 | Gaps:7 | 98.26 | 860 | 73.73 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|cit:102627320 | 6 | 857 | + | 852 | Gaps:7 | 98.26 | 860 | 74.56 | 0.0 | uncharacterized LOC102627320 |
| blastp_kegg | lcl|gmx:100804041 | 2 | 857 | + | 856 | Gaps:20 | 98.47 | 849 | 75.96 | 0.0 | uncharacterized LOC100804041 |
| blastp_uniprot_sprot | sp|Q8WU76|SCFD2_HUMAN | 429 | 557 | + | 129 | Gaps:6 | 19.15 | 684 | 29.01 | 3e-08 | Sec1 family domain-containing protein 2 OS Homo sapiens GN SCFD2 PE 1 SV 2 |
| blastp_uniprot_sprot | sp|Q8BTY8|SCFD2_MOUSE | 438 | 555 | + | 118 | Gaps:2 | 16.96 | 684 | 29.31 | 4e-08 | Sec1 family domain-containing protein 2 OS Mus musculus GN Scfd2 PE 2 SV 1 |
12 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Pfam | 796 | 848 | 53 | PF00995 | none | Sec1 family | IPR001619 |
| SUPERFAMILY | 198 | 329 | 132 | SSF56815 | none | none | IPR001619 |
| Gene3D | 801 | 853 | 53 | G3DSA:3.40.50.1910 | none | none | IPR027482 |
| Gene3D | 211 | 380 | 170 | G3DSA:3.40.50.1910 | none | none | IPR027482 |
| SUPERFAMILY | 707 | 851 | 145 | SSF56815 | none | none | IPR001619 |
| Coils | 641 | 662 | 22 | Coil | none | none | none |
| PANTHER | 761 | 856 | 96 | PTHR11679:SF29 | none | none | none |
| PANTHER | 419 | 720 | 302 | PTHR11679:SF29 | none | none | none |
| PANTHER | 197 | 353 | 157 | PTHR11679:SF29 | none | none | none |
| PANTHER | 197 | 353 | 157 | PTHR11679 | none | none | IPR001619 |
| PANTHER | 761 | 856 | 96 | PTHR11679 | none | none | IPR001619 |
| PANTHER | 419 | 720 | 302 | PTHR11679 | none | none | IPR001619 |
15 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran2_2014_nSecLBD_3P | Qrob_Chr08 | 8 | s_1BN2OD_551 | s_1B5AYF_599 | 17,17 | 0 | 43,51 | lod | 1,9229 | 4,4 |
| Bourran2_2014_rEpiBC*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 35,77 | 14,11 | 55,31 | lod | 2,9413 | 6,2 |
| Bourran2_2015_nEpiBC_3P | Qrob_Chr12 | 12 | s_1B73S5_217 | v_7050_211 | 28,31 | 26,37 | 28,45 | lod | 4.5 | 11.6 |
| Bourran_2000_2002_QTL3_Delta.F | Qrob_Chr08 | 8 | s_1A3EF7_1406 | s_1AIWYC_607 | 30.17 | 21,01 | 40,21 | lod | 6.8553 | 0.055 |
| Bourran2_2014_aSeqBC_A4 | Qrob_Chr08 | 8 | v_15999_278 | v_AP13YL15_395 | 32,52 | 4,22 | 57,22 | lod | 2,7561 | 6,7 |
| Bourran2_2014_nFork*_A4 | Qrob_Chr08 | 8 | PIE175 | s_1CD7GJ_1398 | 31,22 | 5,24 | 57,24 | lod | 2,6724 | 6,8 |
| Bourran2_2014_nLBD*_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,25 | 0 | 35,55 | lod | 2,5951 | 6 |
| Bourran2_2014_nP*_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,19 | 0 | 31,97 | lod | 2,8472 | 6 |
| Bourran2_2014_nPriLBD_3P | Qrob_Chr08 | 8 | v_5216_549 | v_11837_70 | 12,36 | 0 | 30,43 | lod | 2,5806 | 5,1 |
| Bourran2_2014_nPriLBD_A4 | Qrob_Chr08 | 8 | PIE175 | v_9164_159 | 31,85 | 15,39 | 48,29 | lod | 2,8308 | 6,8 |
| Bourran2_2015_rEpiBC_3P | Qrob_Chr08 | 8 | s_A9TNV_543 | v_11837_70 | 9,93 | 9,83 | 11,15 | lod | 3.3 | 7.3 |
| Champenoux_2015_nSeqBC_A4 | Qrob_Chr08 | 8 | v_AD7YD13_501 | s_1A7IED_780 | 43,44 | 43,42 | 43,99 | lod | 3.7 | 8.9 |
| NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf | Qrob_Chr08 | 8 | v_5216_549 | v_11625_20 | 37.08 | 12,26 | 54,9 | lod | 6.5888 | 0.04 |
| Bourran2_2014_nPriBD_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 5,54 | 0,4 | 20,6 | lod | 2,6345 | 5,9 |
