Protein : Qrob_P0533840.2 Q. robur
Protein Identifier  ? Qrob_P0533840.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR19308//PTHR19308:SF5 - PHOSPHATIDYLCHOLINE TRANSFER PROTEIN // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 430  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0008289 lipid binding Interacting selectively and non-covalently with a lipid.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103343932 1 429 + 429 Gaps:12 100.00 435 72.64 0.0 uncharacterized LOC103343932
blastp_kegg lcl|pxb:103939851 1 429 + 429 Gaps:19 100.00 440 71.36 0.0 uncharacterized LOC103939851
blastp_kegg lcl|pxb:103939842 1 429 + 429 Gaps:19 100.00 440 71.36 0.0 uncharacterized LOC103939842
blastp_kegg lcl|pxb:103935948 1 429 + 429 Gaps:19 100.00 440 70.91 0.0 uncharacterized LOC103935948
blastp_kegg lcl|mdm:103454832 1 429 + 429 Gaps:21 100.00 440 71.14 0.0 uncharacterized LOC103454832
blastp_kegg lcl|pxb:103950711 1 429 + 429 Gaps:15 100.00 438 69.63 0.0 uncharacterized LOC103950711
blastp_kegg lcl|vvi:100247984 1 429 + 429 Gaps:15 100.00 438 72.15 0.0 uncharacterized LOC100247984
blastp_kegg lcl|mdm:103409627 1 429 + 429 Gaps:15 100.00 438 69.63 0.0 uncharacterized LOC103409627
blastp_kegg lcl|pop:POPTR_0001s45410g 1 429 + 429 Gaps:10 100.00 435 73.79 0.0 POPTRDRAFT_642519 hypothetical protein
blastp_kegg lcl|tcc:TCM_015607 1 429 + 429 Gaps:16 100.00 433 72.52 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein
blastp_pdb 1ln3_B 165 241 + 77 Gaps:3 34.58 214 35.14 4e-07 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_pdb 1ln3_A 165 241 + 77 Gaps:3 34.58 214 35.14 4e-07 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_pdb 1ln2_B 165 241 + 77 Gaps:3 34.58 214 35.14 4e-07 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_pdb 1ln2_A 165 241 + 77 Gaps:3 34.58 214 35.14 4e-07 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_pdb 1ln1_A 165 241 + 77 Gaps:3 34.58 214 35.14 4e-07 mol:protein length:214 Phosphatidylcholine transfer protein
blastp_uniprot_sprot sp|Q8R1R3|STAR7_MOUSE 140 289 + 150 Gaps:9 39.95 373 31.54 1e-09 StAR-related lipid transfer protein 7 mitochondrial OS Mus musculus GN Stard7 PE 2 SV 2
blastp_uniprot_sprot sp|Q9NQZ5|STAR7_HUMAN 146 289 + 144 Gaps:9 38.65 370 31.47 6e-09 StAR-related lipid transfer protein 7 mitochondrial OS Homo sapiens GN STARD7 PE 1 SV 2
blastp_uniprot_sprot sp|Q9UKL6|PPCT_HUMAN 165 241 + 77 Gaps:3 34.58 214 35.14 1e-06 Phosphatidylcholine transfer protein OS Homo sapiens GN PCTP PE 1 SV 1
blastp_uniprot_sprot sp|P02720|PPCT_BOVIN 165 335 + 171 Gaps:16 78.40 213 25.75 2e-06 Phosphatidylcholine transfer protein OS Bos taurus GN PCTP PE 1 SV 1
rpsblast_cdd gnl|CDD|176879 125 333 + 209 Gaps:6 99.04 209 57.49 3e-82 cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2 -7 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein which traffics PtdCho the most common class of phospholipids in eukaryotes between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism in the development of atherosclerosis and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of PtdCho to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers. It showed a preference for phosphatidylserine cholesterol and phosphatidylglycerol.
rpsblast_cdd gnl|CDD|176920 145 284 + 140 Gaps:13 67.15 207 30.22 2e-12 cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers it showed a preference for phosphatidylserine cholesterol and phosphatidylglycerol.
rpsblast_cdd gnl|CDD|176919 142 333 + 192 Gaps:21 89.37 207 27.03 4e-10 cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein which traffics PtdCho the most common class of phospholipids in eukaryotes between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism in the development of atherosclerosis and may have a mitochondrial function.
rpsblast_cdd gnl|CDD|197591 142 275 + 134 Gaps:4 65.37 205 20.90 2e-09 smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein.
rpsblast_cdd gnl|CDD|176851 163 286 + 124 Gaps:3 63.73 193 24.39 2e-09 cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15 and related domains such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family specific lipids that bind in this pocket are known these include cholesterol (STARD1/STARD3/ STARD4/STARD5) 25-hydroxycholesterol (STARD5) phosphatidylcholine (STARD2/ STARD7/STARD10) phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular processes including lipid trafficking between intracellular compartments lipid metabolism and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer genetic disorders and autoimmune disease. The Arabidopsis homeobox protein GLABRA 2 suppresses root hair formation in hairless epidermal root cells.
rpsblast_kog gnl|CDD|37972 125 337 + 213 Gaps:7 96.80 219 52.83 1e-72 KOG2761 KOG2761 KOG2761 START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 10 85 76 PTHR19308 none none none
PANTHER 121 428 308 PTHR19308:SF5 none none none
PANTHER 121 428 308 PTHR19308 none none none
Phobius 23 44 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 144 335 192 PS50848 none START domain profile. IPR002913
Pfam 142 310 169 PF01852 none START domain IPR002913
SUPERFAMILY 127 334 208 SSF55961 none none none
Phobius 1 22 22 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 125 336 212 G3DSA:3.30.530.20 none none IPR023393
Phobius 45 429 385 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 10 85 76 PTHR19308:SF5 none none none

1 Localization

Analysis Start End Length
TMHMM 20 42 22

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting