Protein : Qrob_P0530010.2 Q. robur
Protein Identifier  ? Qrob_P0530010.2 Organism . Name  Quercus robur
Score  91.1 Score Type  egn
Protein Description  (M=1) K14863 - ribosome biogenesis protein YTM1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 433  
Kegg Orthology  K14863
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102630163 9 432 + 424 Gaps:25 90.68 440 76.44 0.0 ribosome biogenesis protein WDR12 homolog
blastp_kegg lcl|tcc:TCM_018752 1 432 + 432 Gaps:25 93.35 436 76.90 0.0 Transducin/WD40 repeat-like superfamily protein isoform 1
blastp_kegg lcl|vvi:100265290 1 432 + 432 Gaps:29 93.38 438 75.31 0.0 ribosome biogenesis protein WDR12 homolog-like
blastp_kegg lcl|gmx:100789690 1 432 + 432 Gaps:26 93.33 435 73.15 0.0 ribosome biogenesis protein WDR12 homolog
blastp_kegg lcl|pper:PRUPE_ppa005967mg 1 432 + 432 Gaps:26 93.33 435 73.65 0.0 hypothetical protein
blastp_kegg lcl|crb:CARUB_v10001003mg 1 432 + 432 Gaps:28 93.30 433 73.02 0.0 hypothetical protein
blastp_kegg lcl|gmx:100811859 1 432 + 432 Gaps:26 93.33 435 72.91 0.0 ribosome biogenesis protein WDR12 homolog
blastp_kegg lcl|gmx:100818682 1 432 + 432 Gaps:26 93.33 435 72.91 0.0 ribosome biogenesis protein WDR12 homolog
blastp_kegg lcl|cic:CICLE_v10011739mg 9 432 + 424 Gaps:37 90.42 428 77.00 0.0 hypothetical protein
blastp_kegg lcl|ath:AT5G15550 1 432 + 432 Gaps:28 93.30 433 71.53 0.0 WD-40 repeat family protein
blastp_pdb 2ovr_B 123 432 + 310 Gaps:260 64.27 445 52.45 1e-17 mol:protein length:445 F-box/WD repeat protein 7
blastp_pdb 2ovq_B 123 432 + 310 Gaps:260 64.27 445 52.45 1e-17 mol:protein length:445 F-box/WD repeat protein 7
blastp_pdb 2ovp_B 123 432 + 310 Gaps:260 64.27 445 52.45 1e-17 mol:protein length:445 F-box/WD repeat protein 7
blastp_pdb 1p22_A 123 432 + 310 Gaps:144 61.38 435 39.33 5e-13 mol:protein length:435 F-box/WD-repeat protein 1A
blastp_pdb 3fm0_A 126 417 + 292 Gaps:52 75.36 345 27.31 7e-11 mol:protein length:345 Protein CIAO1
blastp_pdb 1erj_C 123 372 + 250 Gaps:78 65.14 393 28.52 3e-09 mol:protein length:393 TRANSCRIPTIONAL REPRESSOR TUP1
blastp_pdb 1erj_B 123 372 + 250 Gaps:78 65.14 393 28.52 3e-09 mol:protein length:393 TRANSCRIPTIONAL REPRESSOR TUP1
blastp_pdb 1erj_A 123 372 + 250 Gaps:78 65.14 393 28.52 3e-09 mol:protein length:393 TRANSCRIPTIONAL REPRESSOR TUP1
blastp_pdb 1vyh_T 170 429 + 260 Gaps:40 63.41 410 23.46 5e-09 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_pdb 1vyh_S 170 429 + 260 Gaps:40 63.41 410 23.46 5e-09 mol:protein length:410 PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB
blastp_uniprot_sprot sp|A8IR43|WDR12_CHLRE 14 432 + 419 Gaps:46 90.77 444 38.21 1e-74 Ribosome biogenesis protein WDR12 homolog OS Chlamydomonas reinhardtii GN CHLREDRAFT_128420 PE 1 SV 2
blastp_uniprot_sprot sp|B5DG67|WDR12_SALSA 14 432 + 419 Gaps:36 91.49 423 37.73 9e-71 Ribosome biogenesis protein wdr12 OS Salmo salar GN wdr12 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NX08|WDR12_DANRE 14 432 + 419 Gaps:35 91.47 422 36.79 3e-68 Ribosome biogenesis protein wdr12 OS Danio rerio GN wdr12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9JJA4|WDR12_MOUSE 14 432 + 419 Gaps:36 91.49 423 35.14 5e-65 Ribosome biogenesis protein WDR12 OS Mus musculus GN Wdr12 PE 2 SV 1
blastp_uniprot_sprot sp|Q5REE6|WDR12_PONAB 14 432 + 419 Gaps:36 91.49 423 36.43 6e-65 Ribosome biogenesis protein WDR12 OS Pongo abelii GN WDR12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9GZL7|WDR12_HUMAN 14 432 + 419 Gaps:36 91.49 423 36.43 6e-65 Ribosome biogenesis protein WDR12 OS Homo sapiens GN WDR12 PE 1 SV 2
blastp_uniprot_sprot sp|P61480|WDR12_RAT 14 432 + 419 Gaps:42 91.49 423 35.92 1e-64 Ribosome biogenesis protein WDR12 OS Rattus norvegicus GN Wdr12 PE 2 SV 1
blastp_uniprot_sprot sp|Q0VC24|WDR12_BOVIN 14 432 + 419 Gaps:36 91.49 423 35.66 9e-64 Ribosome biogenesis protein WDR12 OS Bos taurus GN WDR12 PE 2 SV 1
blastp_uniprot_sprot sp|Q5BJ90|WDR12_XENTR 14 432 + 419 Gaps:36 91.49 423 37.47 1e-62 Ribosome biogenesis protein wdr12 OS Xenopus tropicalis GN wdr12 PE 2 SV 1
blastp_uniprot_sprot sp|Q54W52|WDR12_DICDI 29 432 + 404 Gaps:56 85.10 463 36.80 6e-61 Ribosome biogenesis protein WDR12 homolog OS Dictyostelium discoideum GN wdr12 PE 2 SV 1

27 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 142 185 44 SM00320 none WD40 repeats IPR001680
SMART 197 236 40 SM00320 none WD40 repeats IPR001680
SMART 331 369 39 SM00320 none WD40 repeats IPR001680
SMART 102 140 39 SM00320 none WD40 repeats IPR001680
SMART 264 302 39 SM00320 none WD40 repeats IPR001680
SMART 375 415 41 SM00320 none WD40 repeats IPR001680
ProSitePatterns 402 416 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
Gene3D 110 432 323 G3DSA:2.130.10.10 none none IPR015943
ProSiteProfiles 204 245 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PANTHER 336 432 97 PTHR19855 none none none
PANTHER 1 314 314 PTHR19855 none none none
Hamap 9 432 424 MF_03029 none Ribosome biogenesis protein @gn(WDR12) [WDR12]. IPR028599
ProSiteProfiles 382 424 43 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Pfam 14 82 69 PF08154 none NLE (NUC135) domain IPR012972
SUPERFAMILY 111 431 321 SSF50978 none none IPR017986
Pfam 265 302 38 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 112 140 29 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 143 185 43 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 202 235 34 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 378 415 38 PF00400 none WD domain, G-beta repeat IPR001680
ProSiteProfiles 271 311 41 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 149 194 46 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PRINTS 289 303 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 172 186 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 402 416 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
ProSiteProfiles 149 432 284 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
ProSitePatterns 289 303 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting