Protein : Qrob_P0527220.2 Q. robur
Protein Identifier  ? Qrob_P0527220.2 Organism . Name  Quercus robur
Score  93.2 Score Type  egn
Protein Description  (M=2) K12193 - charged multivesicular body protein 3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 247  
Kegg Orthology  K12193
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0007034 vacuolar transport The directed movement of substances into, out of or within a vacuole.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_011G085100g 1 246 + 246 Gaps:18 100.00 228 91.23 4e-132 hypothetical protein
blastp_kegg lcl|gmx:100781929 1 246 + 246 Gaps:19 100.00 227 91.19 3e-130 vacuolar protein sorting-associated protein 24 homolog 1-like
blastp_kegg lcl|gmx:100797244 1 246 + 246 Gaps:19 100.00 227 89.87 4e-129 vacuolar protein sorting-associated protein 24 homolog 1-like
blastp_kegg lcl|vvi:100260253 1 246 + 246 Gaps:18 100.00 228 89.47 7e-129 vacuolar protein sorting-associated protein 24 homolog 1-like
blastp_kegg lcl|cit:102631294 1 246 + 246 Gaps:17 100.00 229 86.46 2e-127 vacuolar protein sorting-associated protein 24 homolog 1-like
blastp_kegg lcl|cic:CICLE_v10029212mg 1 246 + 246 Gaps:17 100.00 229 86.46 5e-127 hypothetical protein
blastp_kegg lcl|tcc:TCM_042150 1 246 + 246 Gaps:21 100.00 239 84.10 1e-126 SNF7 family protein isoform 2
blastp_kegg lcl|cmo:103501246 1 246 + 246 Gaps:18 100.00 228 88.16 2e-126 vacuolar protein sorting-associated protein 24 homolog 1
blastp_kegg lcl|pxb:103928622 1 246 + 246 Gaps:18 100.00 228 85.53 3e-125 vacuolar protein sorting-associated protein 24 homolog 1-like
blastp_kegg lcl|mdm:103448060 1 246 + 246 Gaps:18 100.00 228 85.53 5e-125 vacuolar protein sorting-associated protein 24 homolog 1-like
blastp_pdb 2gd5_D 11 200 + 190 Gaps:18 96.09 179 44.77 2e-36 mol:protein length:179 Charged multivesicular body protein 3
blastp_pdb 2gd5_C 11 200 + 190 Gaps:18 96.09 179 44.77 2e-36 mol:protein length:179 Charged multivesicular body protein 3
blastp_pdb 2gd5_B 11 200 + 190 Gaps:18 96.09 179 44.77 2e-36 mol:protein length:179 Charged multivesicular body protein 3
blastp_pdb 2gd5_A 11 200 + 190 Gaps:18 96.09 179 44.77 2e-36 mol:protein length:179 Charged multivesicular body protein 3
blastp_pdb 3frt_B 11 203 + 193 Gaps:18 80.28 218 44.57 3e-36 mol:protein length:218 Charged multivesicular body protein 3
blastp_pdb 3frt_A 11 203 + 193 Gaps:18 80.28 218 44.57 3e-36 mol:protein length:218 Charged multivesicular body protein 3
blastp_pdb 3frv_A 11 169 + 159 Gaps:18 92.76 152 47.52 6e-35 mol:protein length:152 Charged multivesicular body protein 3
blastp_uniprot_sprot sp|Q9FFB3|VP241_ARATH 1 246 + 246 Gaps:17 100.00 229 83.41 3e-120 Vacuolar protein sorting-associated protein 24 homolog 1 OS Arabidopsis thaliana GN VPS24-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXH5|VP242_ARATH 52 246 + 195 none 97.50 200 72.31 6e-85 Putative vacuolar protein sorting-associated protein 24 homolog 2 OS Arabidopsis thaliana GN VPS24-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NRM7|CHMP3_XENLA 14 203 + 190 Gaps:17 78.64 220 41.04 1e-37 Charged multivesicular body protein 3 OS Xenopus laevis GN chmp3 PE 2 SV 3
blastp_uniprot_sprot sp|Q5BKM3|CHMP3_XENTR 14 203 + 190 Gaps:17 78.64 220 41.04 3e-37 Charged multivesicular body protein 3 OS Xenopus tropicalis GN chmp3 PE 2 SV 4
blastp_uniprot_sprot sp|Q58CS7|CHMP3_BOVIN 11 203 + 193 Gaps:18 78.83 222 44.00 6e-36 Charged multivesicular body protein 3 OS Bos taurus GN CHMP3 PE 2 SV 4
blastp_uniprot_sprot sp|Q5RAU5|CHMP3_PONAB 11 203 + 193 Gaps:18 78.83 222 44.57 8e-36 Charged multivesicular body protein 3 OS Pongo abelii GN CHMP3 PE 2 SV 3
blastp_uniprot_sprot sp|Q9Y3E7|CHMP3_HUMAN 11 203 + 193 Gaps:18 78.83 222 44.57 9e-36 Charged multivesicular body protein 3 OS Homo sapiens GN CHMP3 PE 1 SV 3
blastp_uniprot_sprot sp|Q4R574|CHMP3_MACFA 11 203 + 193 Gaps:18 78.83 222 44.00 1e-35 Charged multivesicular body protein 3 OS Macaca fascicularis GN CHMP3 PE 2 SV 3
blastp_uniprot_sprot sp|Q8CGS4|CHMP3_RAT 11 203 + 193 Gaps:18 78.48 223 44.00 1e-35 Charged multivesicular body protein 3 OS Rattus norvegicus GN Chmp3 PE 1 SV 3
blastp_uniprot_sprot sp|Q9CQ10|CHMP3_MOUSE 11 203 + 193 Gaps:18 78.12 224 44.00 1e-35 Charged multivesicular body protein 3 OS Mus musculus GN Chmp3 PE 1 SV 3
rpsblast_cdd gnl|CDD|146145 20 203 + 184 Gaps:19 97.63 169 26.06 5e-17 pfam03357 Snf7 Snf7. This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins such as activated cell surface receptors to the lumen of the vacuole/lysosome either for degradation/downregulation or in the case of hydrolases for proper localisation requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family.
rpsblast_kog gnl|CDD|38439 4 246 + 243 Gaps:17 99.56 227 52.21 1e-58 KOG3229 KOG3229 KOG3229 Vacuolar sorting protein VPS24 [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|38440 5 245 + 241 Gaps:19 99.11 224 28.83 8e-20 KOG3230 KOG3230 KOG3230 Vacuolar assembly/sorting protein DID4 [Intracellular trafficking secretion and vesicular transport].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 55 206 152 PF03357 none Snf7 IPR005024
PANTHER 55 246 192 PTHR10476:SF1 none none none
PANTHER 5 37 33 PTHR10476:SF1 none none none
Phobius 55 246 192 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 35 35 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 55 246 192 PTHR10476 none none none
PANTHER 5 37 33 PTHR10476 none none none
Phobius 36 54 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting