Protein : Qrob_P0523900.2 Q. robur
Protein Identifier  ? Qrob_P0523900.2 Organism . Name  Quercus robur
Score  85.1 Score Type  egn
Protein Description  (M=1) K08914 - light-harvesting complex II chlorophyll a/b binding protein 3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 270  
Kegg Orthology  K08914
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0009765 photosynthesis, light harvesting Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103326277 1 269 + 269 none 100.00 269 94.80 0.0 chlorophyll a-b binding protein 13 chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa009987mg 1 269 + 269 none 100.00 269 94.80 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_011G155700g 1 269 + 269 none 100.00 269 94.05 0.0 hypothetical protein
blastp_kegg lcl|vvi:100260599 5 269 + 265 none 99.62 266 95.09 0.0 chlorophyll a-b binding protein 13 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1254540 1 269 + 269 Gaps:1 100.00 268 94.03 0.0 chlorophyll A/B binding protein putative
blastp_kegg lcl|vvi:100854348 1 269 + 269 none 100.00 269 92.57 0.0 chlorophyll a-b binding protein 13 chloroplastic-like
blastp_kegg lcl|vvi:100251653 1 269 + 269 none 100.00 269 92.19 0.0 chlorophyll a-b binding protein 13 chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_005G085800g 1 269 + 269 none 100.00 269 92.19 0.0 hypothetical protein
blastp_kegg lcl|gmx:100779387 1 269 + 269 Gaps:1 100.00 268 93.28 0.0 chlorophyll a-b binding protein 13 chloroplastic-like
blastp_kegg lcl|pxb:103934433 6 269 + 264 none 100.00 264 93.94 2e-180 chlorophyll a-b binding protein 13 chloroplastic
blastp_pdb 1vcr_A 41 268 + 228 Gaps:4 97.41 232 77.43 7e-118 mol:protein length:232 Chlorophyll a-b binding protein AB80
blastp_pdb 1rwt_J 40 269 + 230 Gaps:4 98.28 232 77.19 4e-117 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_I 40 269 + 230 Gaps:4 98.28 232 77.19 4e-117 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_H 40 269 + 230 Gaps:4 98.28 232 77.19 4e-117 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_G 40 269 + 230 Gaps:4 98.28 232 77.19 4e-117 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_F 40 269 + 230 Gaps:4 98.28 232 77.19 4e-117 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_E 40 269 + 230 Gaps:4 98.28 232 77.19 4e-117 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_D 40 269 + 230 Gaps:4 98.28 232 77.19 4e-117 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_C 40 269 + 230 Gaps:4 98.28 232 77.19 4e-117 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_pdb 1rwt_B 40 269 + 230 Gaps:4 98.28 232 77.19 4e-117 mol:protein length:232 Chlorophyll A-B binding protein chloroplast
blastp_uniprot_sprot sp|P27489|CB23_SOLLC 1 269 + 269 Gaps:4 100.00 265 91.32 6e-176 Chlorophyll a-b binding protein 13 chloroplastic OS Solanum lycopersicum GN CAB13 PE 1 SV 1
blastp_uniprot_sprot sp|P27523|CB23_HORVU 1 269 + 269 Gaps:3 100.00 268 86.57 2e-168 Chlorophyll a-b binding protein of LHCII type III chloroplastic OS Hordeum vulgare GN LHBC PE 2 SV 1
blastp_uniprot_sprot sp|P14278|CB24_SOLLC 12 269 + 258 Gaps:12 99.62 265 70.45 2e-123 Chlorophyll a-b binding protein 4 chloroplastic OS Solanum lycopersicum GN CAB4 PE 2 SV 1
blastp_uniprot_sprot sp|P27494|CB23_TOBAC 12 269 + 258 Gaps:12 99.62 265 69.70 8e-122 Chlorophyll a-b binding protein 36 chloroplastic OS Nicotiana tabacum GN CAB36 PE 3 SV 1
blastp_uniprot_sprot sp|Q10HD0|CB23_ORYSJ 6 269 + 264 Gaps:13 100.00 263 72.62 1e-121 Chlorophyll a-b binding protein chloroplastic OS Oryza sativa subsp. japonica GN RCABP89 PE 2 SV 1
blastp_uniprot_sprot sp|A2XJ35|CB23_ORYSI 6 269 + 264 Gaps:13 100.00 263 72.62 1e-121 Chlorophyll a-b binding protein chloroplastic OS Oryza sativa subsp. indica GN OsI_012078 PE 2 SV 1
blastp_uniprot_sprot sp|P12328|CB21_LEMGI 6 269 + 264 Gaps:16 100.00 264 70.45 3e-121 Chlorophyll a-b binding protein of LHCII type I chloroplastic OS Lemna gibba PE 3 SV 1
blastp_uniprot_sprot sp|P12062|CB26_PETSP 12 269 + 258 Gaps:12 99.62 265 69.32 3e-121 Chlorophyll a-b binding protein 37 chloroplastic OS Petunia sp. GN CAB37 PE 3 SV 1
blastp_uniprot_sprot sp|P27518|CB21_GOSHI 12 269 + 258 Gaps:12 99.62 265 68.94 2e-120 Chlorophyll a-b binding protein 151 chloroplastic OS Gossypium hirsutum GN CAB-151 PE 2 SV 2
blastp_uniprot_sprot sp|P14279|CB25_SOLLC 48 269 + 222 Gaps:4 92.83 237 79.09 8e-119 Chlorophyll a-b binding protein 5 chloroplastic (Fragment) OS Solanum lycopersicum GN CAB5 PE 2 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 60 261 202 G3DSA:1.10.3460.10 none none IPR023329
PANTHER 7 269 263 PTHR21649:SF11 none none none
Pfam 68 235 168 PF00504 none Chlorophyll A-B binding protein IPR022796
SUPERFAMILY 50 266 217 SSF103511 none none IPR023329
PANTHER 7 269 263 PTHR21649 none none IPR001344

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting