Protein : Qrob_P0523380.2 Q. robur
Protein Identifier  ? Qrob_P0523380.2 Organism . Name  Quercus robur
Score  86.0 Score Type  egn
Protein Description  (M=3) PTHR17490:SF1 - gb def: putative transmembrane protein ta-2 [xenopus laevis] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 277  
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003725 double-stranded RNA binding Interacting selectively and non-covalently with double-stranded RNA.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0009s03050g 1 275 + 275 Gaps:44 81.34 284 80.95 6e-122 POPTRDRAFT_768259 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10029204mg 1 275 + 275 Gaps:44 99.57 232 81.39 2e-121 hypothetical protein
blastp_kegg lcl|cit:102630893 1 275 + 275 Gaps:44 84.62 273 81.82 7e-121 yrdC domain-containing protein mitochondrial-like
blastp_kegg lcl|tcc:TCM_042043 1 272 + 272 Gaps:44 69.72 327 81.14 8e-119 DHBP synthase RibB-like alpha/beta domain isoform 1
blastp_kegg lcl|mdm:103413027 1 276 + 276 Gaps:44 78.64 295 80.17 2e-118 yrdC domain-containing protein mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa009466mg 1 276 + 276 Gaps:44 79.73 291 80.60 5e-118 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0154480 9 274 + 266 Gaps:44 95.28 233 82.88 9e-118 Protein SUA5 putative
blastp_kegg lcl|sot:102578483 1 275 + 275 Gaps:44 82.50 280 80.95 1e-117 yrdC domain-containing protein mitochondrial-like
blastp_kegg lcl|vvi:100251962 14 276 + 263 Gaps:44 80.51 272 83.56 1e-117 yrdC domain-containing protein mitochondrial-like
blastp_kegg lcl|pxb:103927845 1 276 + 276 Gaps:44 78.64 295 79.74 1e-116 yrdC domain-containing protein mitochondrial
blastp_pdb 1jcu_A 22 261 + 240 Gaps:50 91.35 208 36.84 1e-19 mol:protein length:208 conserved protein MTH1692
blastp_pdb 4e1b_A 106 254 + 149 Gaps:10 41.76 352 32.65 4e-11 mol:protein length:352 YrdC/Sua5 family protein
blastp_pdb 3aje_A 106 254 + 149 Gaps:10 41.76 352 32.65 4e-11 mol:protein length:352 Putative uncharacterized protein ST1526
blastp_pdb 2eqa_A 106 254 + 149 Gaps:10 41.76 352 32.65 4e-11 mol:protein length:352 Hypothetical protein ST1526
blastp_pdb 1kk9_A 55 243 + 189 Gaps:12 83.71 221 25.95 5e-08 mol:protein length:221 probable translation factor yciO
blastp_pdb 1k7j_A 55 243 + 189 Gaps:12 89.81 206 25.95 5e-08 mol:protein length:206 Protein yciO
blastp_uniprot_sprot sp|Q499R4|YRDC_RAT 30 270 + 241 Gaps:53 71.43 280 47.50 4e-42 YrdC domain-containing protein mitochondrial OS Rattus norvegicus GN Yrdc PE 2 SV 1
blastp_uniprot_sprot sp|Q0VC80|YRDC_BOVIN 30 270 + 241 Gaps:52 72.10 276 49.25 1e-40 YrdC domain-containing protein mitochondrial OS Bos taurus GN YRDC PE 2 SV 1
blastp_uniprot_sprot sp|Q3U5F4|YRDC_MOUSE 107 267 + 161 Gaps:8 58.21 280 47.24 3e-39 YrdC domain-containing protein mitochondrial OS Mus musculus GN Yrdc PE 1 SV 1
blastp_uniprot_sprot sp|Q86U90|YRDC_HUMAN 107 267 + 161 Gaps:8 58.42 279 46.63 4e-39 YrdC domain-containing protein mitochondrial OS Homo sapiens GN YRDC PE 1 SV 1
blastp_uniprot_sprot sp|Q60369|TSAC_METJA 70 229 + 160 Gaps:14 73.43 207 35.53 4e-18 Putative threonylcarbamoyl-AMP synthase OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN MJ0062 PE 3 SV 1
blastp_uniprot_sprot sp|Q9UYB2|SUA5_PYRAB 103 254 + 152 Gaps:10 44.12 340 34.67 2e-12 Threonylcarbamoyl-AMP synthase OS Pyrococcus abyssi (strain GE5 / Orsay) GN sua5 PE 1 SV 1
blastp_uniprot_sprot sp|P39153|SUA5_BACSU 55 261 + 207 Gaps:14 59.25 346 29.76 1e-11 Threonylcarbamoyl-AMP synthase OS Bacillus subtilis (strain 168) GN ywlC PE 1 SV 1
blastp_uniprot_sprot sp|Q970S6|SUA5_SULTO 106 254 + 149 Gaps:10 41.76 352 32.65 1e-10 Threonylcarbamoyl-AMP synthase OS Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN sua5 PE 1 SV 1
blastp_uniprot_sprot sp|Q10618|TSAC_MYCTU 30 262 + 233 Gaps:57 85.71 217 32.80 8e-08 Putative threonylcarbamoyl-AMP synthase OS Mycobacterium tuberculosis GN Rv1301 PE 3 SV 1
blastp_uniprot_sprot sp|A1JRY6|TSAC_YERE8 29 205 + 177 Gaps:53 70.53 190 35.07 1e-06 Threonylcarbamoyl-AMP synthase OS Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) GN tsaC PE 3 SV 1
rpsblast_cdd gnl|CDD|201719 32 254 + 223 Gaps:49 100.00 178 43.82 3e-37 pfam01300 Sua5_yciO_yrdC Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.
rpsblast_cdd gnl|CDD|30359 28 259 + 232 Gaps:54 88.15 211 40.32 4e-32 COG0009 SUA5 Putative translation factor (SUA5) [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|161684 22 264 + 243 Gaps:55 97.51 201 33.16 2e-31 TIGR00057 TIGR00057 Sua5/YciO/YrdC/YwlC family protein. partial match to sua5 which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5 BS3690 and weakly to AF0781 and BB0734.
rpsblast_cdd gnl|CDD|30417 92 227 + 136 Gaps:8 17.60 750 30.30 1e-08 COG0068 HypF Hydrogenase maturation factor [Posttranslational modification protein turnover chaperones].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 99 272 174 PTHR17490:SF1 none none none
PANTHER 24 54 31 PTHR17490:SF1 none none none
Pfam 95 254 160 PF01300 none Telomere recombination IPR006070
SUPERFAMILY 24 55 32 SSF55821 none none IPR017945
Gene3D 24 51 28 G3DSA:3.90.870.10 none none IPR017945
Gene3D 96 261 166 G3DSA:3.90.870.10 none none IPR017945
SUPERFAMILY 94 259 166 SSF55821 none none IPR017945
PANTHER 99 272 174 PTHR17490 none none none
PANTHER 24 54 31 PTHR17490 none none none
ProSiteProfiles 24 256 233 PS51163 none YrdC-like domain profile. IPR006070

0 Localization

0 Qtllist

0 Targeting