Protein : Qrob_P0521420.2 Q. robur
Protein Identifier  ? Qrob_P0521420.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=4) PTHR10217:SF489 - CYCLIC NUCLEOTIDE-GATED ION CHANNEL 7-RELATED (PTHR10217:SF489) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 768  
Kegg Orthology  K05391
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103487043 1 766 + 766 Gaps:39 100.00 735 81.36 0.0 putative cyclic nucleotide-gated ion channel 8
blastp_kegg lcl|csv:101221166 1 766 + 766 Gaps:43 100.00 731 81.94 0.0 putative cyclic nucleotide-gated ion channel 8-like
blastp_kegg lcl|tcc:TCM_027461 1 766 + 766 Gaps:33 99.07 752 77.85 0.0 Cyclic nucleotide gated channel 8
blastp_kegg lcl|rcu:RCOM_1441620 1 761 + 761 Gaps:24 73.93 1005 77.79 0.0 Cyclic nucleotide-gated ion channel putative (EC:2.7.11.12)
blastp_kegg lcl|pop:POPTR_0003s18120g 1 761 + 761 Gaps:28 99.73 739 78.56 0.0 POPTRDRAFT_853754 hypothetical protein
blastp_kegg lcl|vvi:100241716 1 766 + 766 Gaps:25 100.00 743 77.66 0.0 putative cyclic nucleotide-gated ion channel 8-like
blastp_kegg lcl|pop:POPTR_0001s03550g 1 761 + 761 Gaps:24 99.73 745 77.12 0.0 cyclic nucleotide gated channel 7 family protein
blastp_kegg lcl|tcc:TCM_037043 1 766 + 766 Gaps:39 100.00 739 76.45 0.0 Cyclic nucleotide gated channel 5 isoform 1
blastp_kegg lcl|aly:ARALYDRAFT_335228 6 767 + 762 Gaps:27 99.60 752 76.37 0.0 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10018178mg 6 766 + 761 Gaps:32 99.47 753 76.77 0.0 hypothetical protein
blastp_pdb 1wgp_A 521 644 + 124 none 90.51 137 89.52 6e-71 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_pdb 1q5o_A 460 597 + 138 Gaps:7 63.29 207 34.35 9e-13 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q43_B 460 597 + 138 Gaps:7 63.29 207 34.35 9e-13 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q43_A 460 597 + 138 Gaps:7 63.29 207 34.35 9e-13 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q3e_B 460 597 + 138 Gaps:7 63.29 207 34.35 9e-13 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 1q3e_A 460 597 + 138 Gaps:7 63.29 207 34.35 9e-13 mol:protein length:207 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ffq_B 460 597 + 138 Gaps:7 64.85 202 34.35 1e-12 mol:protein length:202 Potassium/sodium hyperpolarization-activated
blastp_pdb 3ffq_A 460 597 + 138 Gaps:7 64.85 202 34.35 1e-12 mol:protein length:202 Potassium/sodium hyperpolarization-activated
blastp_pdb 3otf_A 460 597 + 138 Gaps:7 59.55 220 34.35 1e-12 mol:protein length:220 Potassium/sodium hyperpolarization-activated
blastp_pdb 3u11_B 460 597 + 138 Gaps:7 62.38 210 34.35 1e-12 mol:protein length:210 Potassium/sodium hyperpolarization-activated
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 6 767 + 762 Gaps:34 99.60 753 75.73 0.0 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 6 760 + 755 Gaps:47 99.46 738 77.11 0.0 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 11 761 + 751 Gaps:42 99.72 717 72.45 0.0 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 1 764 + 764 Gaps:50 99.87 747 69.57 0.0 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 1 765 + 765 Gaps:53 99.86 733 70.77 0.0 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 14 764 + 751 Gaps:56 99.58 716 54.70 0.0 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LNJ0|CNG10_ARATH 55 761 + 707 Gaps:54 96.91 711 55.01 0.0 Probable cyclic nucleotide-gated ion channel 10 OS Arabidopsis thaliana GN CNGC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LD40|CNG13_ARATH 63 761 + 699 Gaps:59 96.26 696 54.03 0.0 Putative cyclic nucleotide-gated ion channel 13 OS Arabidopsis thaliana GN CNGC13 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SJA4|CNG14_ARATH 87 764 + 678 Gaps:41 91.87 726 55.17 0.0 Probable cyclic nucleotide-gated ion channel 14 OS Arabidopsis thaliana GN CNGC14 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SL29|CNG15_ARATH 64 762 + 699 Gaps:64 95.13 678 55.66 0.0 Putative cyclic nucleotide-gated ion channel 15 OS Arabidopsis thaliana GN CNGC15 PE 3 SV 1

32 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 524 642 119 G3DSA:2.60.120.10 none none IPR014710
Phobius 296 421 126 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 13 35 23 PTHR10217:SF489 none none none
PANTHER 66 309 244 PTHR10217:SF489 none none none
Gene3D 369 448 80 G3DSA:1.10.287.70 none none none
Gene3D 131 299 169 G3DSA:1.10.287.70 none none none
PANTHER 66 309 244 PTHR10217 none none none
ProSiteProfiles 526 656 131 PS50042 none cAMP/cGMP binding motif profile. IPR000595
Phobius 165 201 37 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 458 517 60 G3DSA:1.10.287.630 none none none
PANTHER 409 698 290 PTHR10217:SF489 none none none
Phobius 113 133 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 547 642 96 PF00027 none Cyclic nucleotide-binding domain IPR000595
Phobius 145 164 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 154 443 290 PF00520 none Ion transport protein IPR005821
PANTHER 367 389 23 PTHR10217 none none none
SMART 526 657 132 SM00100 none Cyclic nucleotide-monophosphate binding domain IPR000595
PANTHER 409 698 290 PTHR10217 none none none
PANTHER 13 35 23 PTHR10217 none none none
Phobius 134 144 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 112 112 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 102 300 199 SSF81324 none none none
SUPERFAMILY 369 448 80 SSF81324 none none none
ProSiteProfiles 662 691 30 PS50096 none IQ motif profile. IPR000048
Phobius 202 222 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 223 273 51 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Coils 675 703 29 Coil none none none
Phobius 274 295 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 442 767 326 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 422 441 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

3 Localization

Analysis Start End Length
TMHMM 422 441 19
TMHMM 274 296 22
TMHMM 107 129 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting